GCA_009996805.1 - 3 region(s)

Identified primary metabolite regions

JAACXY010000010 (original name was: JAACXY010000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	TPP_AA_metabolism	Putative	5,816	37,951

JAACXY010000011 (original name was: JAACXY010000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Pyruvate2acetate-formate	SCFA	22,094	45,338	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAACXY010000022 (original name was: JAACXY010000022.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	TPP_fatty_acids	Putative	26,260	47,662

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	TPP_AA_metabolism	Putative	5,816	37,951
Region 2.1	Pyruvate2acetate-formate	SCFA	22,094	45,338	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 14.1	TPP_fatty_acids	Putative	26,260	47,662

No primary metabolite regions were found in these records:: JAACXY010000012 (original name was: JAACXY010000012.1); JAACXY010000013 (original name was: JAACXY010000013.1); JAACXY010000014 (original name was: JAACXY010000014.1); JAACXY010000015 (original name was: JAACXY010000015.1); JAACXY010000016 (original name was: JAACXY010000016.1); JAACXY010000017 (original name was: JAACXY010000017.1); JAACXY010000018 (original name was: JAACXY010000018.1); JAACXY010000019 (original name was: JAACXY010000019.1); JAACXY010000001 (original name was: JAACXY010000001.1); JAACXY010000020 (original name was: JAACXY010000020.1); JAACXY010000021 (original name was: JAACXY010000021.1); JAACXY010000023 (original name was: JAACXY010000023.1); JAACXY010000024 (original name was: JAACXY010000024.1); JAACXY010000025 (original name was: JAACXY010000025.1); JAACXY010000026 (original name was: JAACXY010000026.1); JAACXY010000027 (original name was: JAACXY010000027.1); JAACXY010000028 (original name was: JAACXY010000028.1); JAACXY010000029 (original name was: JAACXY010000029.1); JAACXY010000002 (original name was: JAACXY010000002.1); JAACXY010000030 (original name was: JAACXY010000030.1); JAACXY010000031 (original name was: JAACXY010000031.1); JAACXY010000032 (original name was: JAACXY010000032.1); JAACXY010000033 (original name was: JAACXY010000033.1); JAACXY010000034 (original name was: JAACXY010000034.1); JAACXY010000035 (original name was: JAACXY010000035.1); JAACXY010000036 (original name was: JAACXY010000036.1); JAACXY010000037 (original name was: JAACXY010000037.1); JAACXY010000038 (original name was: JAACXY010000038.1); JAACXY010000039 (original name was: JAACXY010000039.1); JAACXY010000003 (original name was: JAACXY010000003.1); JAACXY010000040 (original name was: JAACXY010000040.1); JAACXY010000041 (original name was: JAACXY010000041.1); JAACXY010000042 (original name was: JAACXY010000042.1); JAACXY010000043 (original name was: JAACXY010000043.1); JAACXY010000044 (original name was: JAACXY010000044.1); JAACXY010000045 (original name was: JAACXY010000045.1); JAACXY010000046 (original name was: JAACXY010000046.1); JAACXY010000047 (original name was: JAACXY010000047.1); JAACXY010000048 (original name was: JAACXY010000048.1); JAACXY010000049 (original name was: JAACXY010000049.1); JAACXY010000004 (original name was: JAACXY010000004.1); JAACXY010000050 (original name was: JAACXY010000050.1); JAACXY010000051 (original name was: JAACXY010000051.1); JAACXY010000052 (original name was: JAACXY010000052.1); JAACXY010000053 (original name was: JAACXY010000053.1); JAACXY010000054 (original name was: JAACXY010000054.1); JAACXY010000055 (original name was: JAACXY010000055.1); JAACXY010000056 (original name was: JAACXY010000056.1); JAACXY010000057 (original name was: JAACXY010000057.1); JAACXY010000058 (original name was: JAACXY010000058.1); JAACXY010000059 (original name was: JAACXY010000059.1); JAACXY010000005 (original name was: JAACXY010000005.1); JAACXY010000060 (original name was: JAACXY010000060.1); JAACXY010000061 (original name was: JAACXY010000061.1); JAACXY010000062 (original name was: JAACXY010000062.1); JAACXY010000063 (original name was: JAACXY010000063.1); JAACXY010000064 (original name was: JAACXY010000064.1); JAACXY010000065 (original name was: JAACXY010000065.1); JAACXY010000066 (original name was: JAACXY010000066.1); JAACXY010000067 (original name was: JAACXY010000067.1); JAACXY010000068 (original name was: JAACXY010000068.1); JAACXY010000069 (original name was: JAACXY010000069.1); JAACXY010000006 (original name was: JAACXY010000006.1); JAACXY010000070 (original name was: JAACXY010000070.1); JAACXY010000071 (original name was: JAACXY010000071.1); JAACXY010000072 (original name was: JAACXY010000072.1); JAACXY010000073 (original name was: JAACXY010000073.1); JAACXY010000074 (original name was: JAACXY010000074.1); JAACXY010000075 (original name was: JAACXY010000075.1); JAACXY010000076 (original name was: JAACXY010000076.1); JAACXY010000077 (original name was: JAACXY010000077.1); JAACXY010000078 (original name was: JAACXY010000078.1); JAACXY010000079 (original name was: JAACXY010000079.1); JAACXY010000007 (original name was: JAACXY010000007.1); JAACXY010000080 (original name was: JAACXY010000080.1); JAACXY010000081 (original name was: JAACXY010000081.1); JAACXY010000082 (original name was: JAACXY010000082.1); JAACXY010000083 (original name was: JAACXY010000083.1); JAACXY010000084 (original name was: JAACXY010000084.1); JAACXY010000085 (original name was: JAACXY010000085.1); JAACXY010000086 (original name was: JAACXY010000086.1); JAACXY010000087 (original name was: JAACXY010000087.1); JAACXY010000088 (original name was: JAACXY010000088.1); JAACXY010000008 (original name was: JAACXY010000008.1); JAACXY010000009 (original name was: JAACXY010000009.1)

Compact view

c00001_JAACXY0.. - Region 1 - TPP_AA_metabolism

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Location: 5,816 - 37,951 nt. (total: 32,136 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00002_JAACXY0.. - Region 1 - Pyruvate2acetate-formate

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Location: 22,094 - 45,338 nt. (total: 23,245 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00014_JAACXY0.. - Region 1 - TPP_fatty_acids

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Location: 26,260 - 47,662 nt. (total: 21,403 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.