GCA_010363715.1 - 3 region(s)

Identified primary metabolite regions

JAAFGQ010000016 (original name was: JAAFGQ010000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	TPP_AA_metabolism	Putative	28,939	52,669

JAAFGQ010000006 (original name was: JAAFGQ010000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 100.1	Pyruvate2acetate-formate	SCFA	1	15,504	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAAFGQ010000008 (original name was: JAAFGQ010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 122.1	TPP_fatty_acids	Putative	26,445	52,146

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 41.1	TPP_AA_metabolism	Putative	28,939	52,669
Region 100.1	Pyruvate2acetate-formate	SCFA	1	15,504	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 122.1	TPP_fatty_acids	Putative	26,445	52,146

No primary metabolite regions were found in these records:: JAAFGQ010000100 (original name was: JAAFGQ010000100.1); JAAFGQ010000101 (original name was: JAAFGQ010000101.1); JAAFGQ010000102 (original name was: JAAFGQ010000102.1); JAAFGQ010000103 (original name was: JAAFGQ010000103.1); JAAFGQ010000104 (original name was: JAAFGQ010000104.1); JAAFGQ010000105 (original name was: JAAFGQ010000105.1); JAAFGQ010000106 (original name was: JAAFGQ010000106.1); JAAFGQ010000107 (original name was: JAAFGQ010000107.1); JAAFGQ010000108 (original name was: JAAFGQ010000108.1); JAAFGQ010000109 (original name was: JAAFGQ010000109.1); JAAFGQ010000010 (original name was: JAAFGQ010000010.1); JAAFGQ010000110 (original name was: JAAFGQ010000110.1); JAAFGQ010000111 (original name was: JAAFGQ010000111.1); JAAFGQ010000112 (original name was: JAAFGQ010000112.1); JAAFGQ010000113 (original name was: JAAFGQ010000113.1); JAAFGQ010000114 (original name was: JAAFGQ010000114.1); JAAFGQ010000115 (original name was: JAAFGQ010000115.1); JAAFGQ010000116 (original name was: JAAFGQ010000116.1); JAAFGQ010000117 (original name was: JAAFGQ010000117.1); JAAFGQ010000118 (original name was: JAAFGQ010000118.1); JAAFGQ010000119 (original name was: JAAFGQ010000119.1); JAAFGQ010000011 (original name was: JAAFGQ010000011.1); JAAFGQ010000120 (original name was: JAAFGQ010000120.1); JAAFGQ010000121 (original name was: JAAFGQ010000121.1); JAAFGQ010000122 (original name was: JAAFGQ010000122.1); JAAFGQ010000123 (original name was: JAAFGQ010000123.1); JAAFGQ010000124 (original name was: JAAFGQ010000124.1); JAAFGQ010000125 (original name was: JAAFGQ010000125.1); JAAFGQ010000126 (original name was: JAAFGQ010000126.1); JAAFGQ010000127 (original name was: JAAFGQ010000127.1); JAAFGQ010000128 (original name was: JAAFGQ010000128.1); JAAFGQ010000129 (original name was: JAAFGQ010000129.1); JAAFGQ010000012 (original name was: JAAFGQ010000012.1); JAAFGQ010000130 (original name was: JAAFGQ010000130.1); JAAFGQ010000131 (original name was: JAAFGQ010000131.1); JAAFGQ010000132 (original name was: JAAFGQ010000132.1); JAAFGQ010000133 (original name was: JAAFGQ010000133.1); JAAFGQ010000013 (original name was: JAAFGQ010000013.1); JAAFGQ010000014 (original name was: JAAFGQ010000014.1); JAAFGQ010000015 (original name was: JAAFGQ010000015.1); JAAFGQ010000017 (original name was: JAAFGQ010000017.1); JAAFGQ010000018 (original name was: JAAFGQ010000018.1); JAAFGQ010000019 (original name was: JAAFGQ010000019.1); JAAFGQ010000001 (original name was: JAAFGQ010000001.1); JAAFGQ010000020 (original name was: JAAFGQ010000020.1); JAAFGQ010000021 (original name was: JAAFGQ010000021.1); JAAFGQ010000022 (original name was: JAAFGQ010000022.1); JAAFGQ010000023 (original name was: JAAFGQ010000023.1); JAAFGQ010000024 (original name was: JAAFGQ010000024.1); JAAFGQ010000025 (original name was: JAAFGQ010000025.1); JAAFGQ010000026 (original name was: JAAFGQ010000026.1); JAAFGQ010000027 (original name was: JAAFGQ010000027.1); JAAFGQ010000028 (original name was: JAAFGQ010000028.1); JAAFGQ010000029 (original name was: JAAFGQ010000029.1); JAAFGQ010000002 (original name was: JAAFGQ010000002.1); JAAFGQ010000030 (original name was: JAAFGQ010000030.1); JAAFGQ010000031 (original name was: JAAFGQ010000031.1); JAAFGQ010000032 (original name was: JAAFGQ010000032.1); JAAFGQ010000033 (original name was: JAAFGQ010000033.1); JAAFGQ010000034 (original name was: JAAFGQ010000034.1); JAAFGQ010000035 (original name was: JAAFGQ010000035.1); JAAFGQ010000036 (original name was: JAAFGQ010000036.1); JAAFGQ010000037 (original name was: JAAFGQ010000037.1); JAAFGQ010000038 (original name was: JAAFGQ010000038.1); JAAFGQ010000039 (original name was: JAAFGQ010000039.1); JAAFGQ010000003 (original name was: JAAFGQ010000003.1); JAAFGQ010000040 (original name was: JAAFGQ010000040.1); JAAFGQ010000041 (original name was: JAAFGQ010000041.1); JAAFGQ010000042 (original name was: JAAFGQ010000042.1); JAAFGQ010000043 (original name was: JAAFGQ010000043.1); JAAFGQ010000044 (original name was: JAAFGQ010000044.1); JAAFGQ010000045 (original name was: JAAFGQ010000045.1); JAAFGQ010000046 (original name was: JAAFGQ010000046.1); JAAFGQ010000047 (original name was: JAAFGQ010000047.1); JAAFGQ010000048 (original name was: JAAFGQ010000048.1); JAAFGQ010000049 (original name was: JAAFGQ010000049.1); JAAFGQ010000004 (original name was: JAAFGQ010000004.1); JAAFGQ010000050 (original name was: JAAFGQ010000050.1); JAAFGQ010000051 (original name was: JAAFGQ010000051.1); JAAFGQ010000052 (original name was: JAAFGQ010000052.1); JAAFGQ010000053 (original name was: JAAFGQ010000053.1); JAAFGQ010000054 (original name was: JAAFGQ010000054.1); JAAFGQ010000055 (original name was: JAAFGQ010000055.1); JAAFGQ010000056 (original name was: JAAFGQ010000056.1); JAAFGQ010000057 (original name was: JAAFGQ010000057.1); JAAFGQ010000058 (original name was: JAAFGQ010000058.1); JAAFGQ010000059 (original name was: JAAFGQ010000059.1); JAAFGQ010000005 (original name was: JAAFGQ010000005.1); JAAFGQ010000060 (original name was: JAAFGQ010000060.1); JAAFGQ010000061 (original name was: JAAFGQ010000061.1); JAAFGQ010000062 (original name was: JAAFGQ010000062.1); JAAFGQ010000063 (original name was: JAAFGQ010000063.1); JAAFGQ010000064 (original name was: JAAFGQ010000064.1); JAAFGQ010000065 (original name was: JAAFGQ010000065.1); JAAFGQ010000066 (original name was: JAAFGQ010000066.1); JAAFGQ010000067 (original name was: JAAFGQ010000067.1); JAAFGQ010000068 (original name was: JAAFGQ010000068.1); JAAFGQ010000069 (original name was: JAAFGQ010000069.1); JAAFGQ010000070 (original name was: JAAFGQ010000070.1); JAAFGQ010000071 (original name was: JAAFGQ010000071.1); JAAFGQ010000072 (original name was: JAAFGQ010000072.1); JAAFGQ010000073 (original name was: JAAFGQ010000073.1); JAAFGQ010000074 (original name was: JAAFGQ010000074.1); JAAFGQ010000075 (original name was: JAAFGQ010000075.1); JAAFGQ010000076 (original name was: JAAFGQ010000076.1); JAAFGQ010000077 (original name was: JAAFGQ010000077.1); JAAFGQ010000078 (original name was: JAAFGQ010000078.1); JAAFGQ010000079 (original name was: JAAFGQ010000079.1); JAAFGQ010000007 (original name was: JAAFGQ010000007.1); JAAFGQ010000080 (original name was: JAAFGQ010000080.1); JAAFGQ010000081 (original name was: JAAFGQ010000081.1); JAAFGQ010000082 (original name was: JAAFGQ010000082.1); JAAFGQ010000083 (original name was: JAAFGQ010000083.1); JAAFGQ010000084 (original name was: JAAFGQ010000084.1); JAAFGQ010000085 (original name was: JAAFGQ010000085.1); JAAFGQ010000086 (original name was: JAAFGQ010000086.1); JAAFGQ010000087 (original name was: JAAFGQ010000087.1); JAAFGQ010000088 (original name was: JAAFGQ010000088.1); JAAFGQ010000089 (original name was: JAAFGQ010000089.1); JAAFGQ010000090 (original name was: JAAFGQ010000090.1); JAAFGQ010000091 (original name was: JAAFGQ010000091.1); JAAFGQ010000092 (original name was: JAAFGQ010000092.1); JAAFGQ010000093 (original name was: JAAFGQ010000093.1); JAAFGQ010000094 (original name was: JAAFGQ010000094.1); JAAFGQ010000095 (original name was: JAAFGQ010000095.1); JAAFGQ010000096 (original name was: JAAFGQ010000096.1); JAAFGQ010000097 (original name was: JAAFGQ010000097.1); JAAFGQ010000098 (original name was: JAAFGQ010000098.1); JAAFGQ010000099 (original name was: JAAFGQ010000099.1); JAAFGQ010000009 (original name was: JAAFGQ010000009.1)

Compact view

c00041_JAAFGQ0.. - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 28,939 - 52,669 nt. (total: 23,731 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00100_JAAFGQ0.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 1 - 15,504 nt. (total: 15,504 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00122_JAAFGQ0.. - Region 1 - TPP_fatty_acids

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Location: 26,445 - 52,146 nt. (total: 25,702 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.