GCA_010820925.1 - 8 region(s)

Identified primary metabolite regions

WMBS01000011.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	fatty_acids-unassigned	Putative	25,860	51,650	Acetate to butyrate C. sporogenes	BUT	33%

WMBS01000018.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Pyruvate2acetate-formate	SCFA	1	19,435	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

WMBS01000001.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	Oxidative_glycerol	Other	24,278	57,345
Region 24.2	TPP_AA_metabolism	Putative	154,849	186,086

WMBS01000002.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	fatty_acids-unassigned,TPP_AA_metabolism	Putative	131,524	185,230	Acetate to butyrate C. sporogenes	BUT	33%

WMBS01000047.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	Putrescine2spermidine	Aliphatic_amine	1	17,778	Arginine2putrescine R. gnavus	PUTR	40%

WMBS01000049.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	Fumarate2succinate	SCFA	1	18,252

WMBS01000006.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 79.1	fatty_acids-unassigned	Putative	46,475	70,007	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: WMBS01000101.1; WMBS01000102.1; WMBS01000103.1; WMBS01000104.1; WMBS01000105.1; WMBS01000106.1; WMBS01000107.1; WMBS01000108.1; WMBS01000109.1; WMBS01000110.1; WMBS01000010.1; WMBS01000111.1; WMBS01000112.1; WMBS01000113.1; WMBS01000012.1; WMBS01000013.1; WMBS01000014.1; WMBS01000015.1; WMBS01000016.1; WMBS01000017.1; WMBS01000019.1; WMBS01000020.1; WMBS01000021.1; WMBS01000022.1; WMBS01000023.1; WMBS01000024.1; WMBS01000025.1; WMBS01000026.1; WMBS01000027.1; WMBS01000028.1; WMBS01000029.1; WMBS01000030.1; WMBS01000031.1; WMBS01000032.1; WMBS01000033.1; WMBS01000034.1; WMBS01000035.1; WMBS01000036.1; WMBS01000037.1; WMBS01000038.1; WMBS01000039.1; WMBS01000003.1; WMBS01000040.1; WMBS01000041.1; WMBS01000042.1; WMBS01000043.1; WMBS01000044.1; WMBS01000045.1; WMBS01000046.1; WMBS01000048.1; WMBS01000004.1; WMBS01000050.1; WMBS01000051.1; WMBS01000052.1; WMBS01000053.1; WMBS01000054.1; WMBS01000055.1; WMBS01000056.1; WMBS01000057.1; WMBS01000058.1; WMBS01000059.1; WMBS01000005.1; WMBS01000060.1; WMBS01000061.1; WMBS01000062.1; WMBS01000063.1; WMBS01000064.1; WMBS01000065.1; WMBS01000066.1; WMBS01000067.1; WMBS01000068.1; WMBS01000069.1; WMBS01000070.1; WMBS01000071.1; WMBS01000072.1; WMBS01000073.1; WMBS01000074.1; WMBS01000075.1; WMBS01000076.1; WMBS01000077.1; WMBS01000078.1; WMBS01000079.1; WMBS01000080.1; WMBS01000007.1; WMBS01000081.1; WMBS01000082.1; WMBS01000083.1; WMBS01000084.1; WMBS01000085.1; WMBS01000086.1; WMBS01000087.1; WMBS01000088.1; WMBS01000089.1; WMBS01000090.1; WMBS01000008.1; WMBS01000091.1; WMBS01000092.1; WMBS01000093.1; WMBS01000094.1; WMBS01000095.1; WMBS01000096.1; WMBS01000097.1; WMBS01000098.1; WMBS01000099.1; WMBS01000100.1; WMBS01000009.1

Compact view

WMBS01000011.1 - Region 1 - fatty_acids-unassigned

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Location: 25,860 - 51,650 nt. (total: 25,791 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

WMBS01000018.1 - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 19,435 nt. (total: 19,435 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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WMBS01000001.1 - Region 1 - Oxidative_glycerol

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Location: 24,278 - 57,345 nt. (total: 33,068 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

WMBS01000001.1 - Region 2 - TPP_AA_metabolism

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Location: 154,849 - 186,086 nt. (total: 31,238 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

WMBS01000002.1 - Region 1 - TPP_AA_metabolism,fatty_acids-unassigned

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Location: 131,524 - 185,230 nt. (total: 53,707 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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WMBS01000047.1 - Region 1 - Putrescine2spermidine

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Location: 1 - 17,778 nt. (total: 17,778 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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WMBS01000049.1 - Region 1 - Fumarate2succinate

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Location: 1 - 18,252 nt. (total: 18,252 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

WMBS01000006.1 - Region 1 - fatty_acids-unassigned

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Location: 46,475 - 70,007 nt. (total: 23,533 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters