GCA_011031945.1 - 3 region(s)

Identified primary metabolite regions

JAAJBK010000015 (original name was: JAAJBK010000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	TPP_AA_metabolism	Putative	5,811	37,816

JAAJBK010000001 (original name was: JAAJBK010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Pyruvate2acetate-formate	SCFA	237,203	260,447	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAAJBK010000003 (original name was: JAAJBK010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	TPP_fatty_acids	Putative	32,887	58,588

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 6.1	TPP_AA_metabolism	Putative	5,811	37,816
Region 11.1	Pyruvate2acetate-formate	SCFA	237,203	260,447	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 33.1	TPP_fatty_acids	Putative	32,887	58,588

No primary metabolite regions were found in these records:: JAAJBK010000010 (original name was: JAAJBK010000010.1); JAAJBK010000011 (original name was: JAAJBK010000011.1); JAAJBK010000012 (original name was: JAAJBK010000012.1); JAAJBK010000013 (original name was: JAAJBK010000013.1); JAAJBK010000014 (original name was: JAAJBK010000014.1); JAAJBK010000016 (original name was: JAAJBK010000016.1); JAAJBK010000017 (original name was: JAAJBK010000017.1); JAAJBK010000018 (original name was: JAAJBK010000018.1); JAAJBK010000019 (original name was: JAAJBK010000019.1); JAAJBK010000020 (original name was: JAAJBK010000020.1); JAAJBK010000021 (original name was: JAAJBK010000021.1); JAAJBK010000022 (original name was: JAAJBK010000022.1); JAAJBK010000023 (original name was: JAAJBK010000023.1); JAAJBK010000024 (original name was: JAAJBK010000024.1); JAAJBK010000025 (original name was: JAAJBK010000025.1); JAAJBK010000026 (original name was: JAAJBK010000026.1); JAAJBK010000027 (original name was: JAAJBK010000027.1); JAAJBK010000028 (original name was: JAAJBK010000028.1); JAAJBK010000029 (original name was: JAAJBK010000029.1); JAAJBK010000002 (original name was: JAAJBK010000002.1); JAAJBK010000030 (original name was: JAAJBK010000030.1); JAAJBK010000031 (original name was: JAAJBK010000031.1); JAAJBK010000032 (original name was: JAAJBK010000032.1); JAAJBK010000033 (original name was: JAAJBK010000033.1); JAAJBK010000034 (original name was: JAAJBK010000034.1); JAAJBK010000035 (original name was: JAAJBK010000035.1); JAAJBK010000036 (original name was: JAAJBK010000036.1); JAAJBK010000037 (original name was: JAAJBK010000037.1); JAAJBK010000038 (original name was: JAAJBK010000038.1); JAAJBK010000039 (original name was: JAAJBK010000039.1); JAAJBK010000040 (original name was: JAAJBK010000040.1); JAAJBK010000041 (original name was: JAAJBK010000041.1); JAAJBK010000042 (original name was: JAAJBK010000042.1); JAAJBK010000043 (original name was: JAAJBK010000043.1); JAAJBK010000044 (original name was: JAAJBK010000044.1); JAAJBK010000045 (original name was: JAAJBK010000045.1); JAAJBK010000046 (original name was: JAAJBK010000046.1); JAAJBK010000047 (original name was: JAAJBK010000047.1); JAAJBK010000048 (original name was: JAAJBK010000048.1); JAAJBK010000049 (original name was: JAAJBK010000049.1); JAAJBK010000004 (original name was: JAAJBK010000004.1); JAAJBK010000050 (original name was: JAAJBK010000050.1); JAAJBK010000051 (original name was: JAAJBK010000051.1); JAAJBK010000052 (original name was: JAAJBK010000052.1); JAAJBK010000053 (original name was: JAAJBK010000053.1); JAAJBK010000054 (original name was: JAAJBK010000054.1); JAAJBK010000055 (original name was: JAAJBK010000055.1); JAAJBK010000056 (original name was: JAAJBK010000056.1); JAAJBK010000057 (original name was: JAAJBK010000057.1); JAAJBK010000058 (original name was: JAAJBK010000058.1); JAAJBK010000059 (original name was: JAAJBK010000059.1); JAAJBK010000005 (original name was: JAAJBK010000005.1); JAAJBK010000060 (original name was: JAAJBK010000060.1); JAAJBK010000061 (original name was: JAAJBK010000061.1); JAAJBK010000062 (original name was: JAAJBK010000062.1); JAAJBK010000063 (original name was: JAAJBK010000063.1); JAAJBK010000064 (original name was: JAAJBK010000064.1); JAAJBK010000065 (original name was: JAAJBK010000065.1); JAAJBK010000066 (original name was: JAAJBK010000066.1); JAAJBK010000067 (original name was: JAAJBK010000067.1); JAAJBK010000068 (original name was: JAAJBK010000068.1); JAAJBK010000069 (original name was: JAAJBK010000069.1); JAAJBK010000006 (original name was: JAAJBK010000006.1); JAAJBK010000070 (original name was: JAAJBK010000070.1); JAAJBK010000071 (original name was: JAAJBK010000071.1); JAAJBK010000072 (original name was: JAAJBK010000072.1); JAAJBK010000073 (original name was: JAAJBK010000073.1); JAAJBK010000074 (original name was: JAAJBK010000074.1); JAAJBK010000075 (original name was: JAAJBK010000075.1); JAAJBK010000076 (original name was: JAAJBK010000076.1); JAAJBK010000077 (original name was: JAAJBK010000077.1); JAAJBK010000078 (original name was: JAAJBK010000078.1); JAAJBK010000007 (original name was: JAAJBK010000007.1); JAAJBK010000008 (original name was: JAAJBK010000008.1); JAAJBK010000009 (original name was: JAAJBK010000009.1)

Compact view

c00006_JAAJBK0.. - Region 1 - TPP_AA_metabolism

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Location: 5,811 - 37,816 nt. (total: 32,006 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00011_JAAJBK0.. - Region 1 - Pyruvate2acetate-formate

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Location: 237,203 - 260,447 nt. (total: 23,245 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00033_JAAJBK0.. - Region 1 - TPP_fatty_acids

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Location: 32,887 - 58,588 nt. (total: 25,702 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.