GCA_012926565.1 - 5 region(s)

Identified primary metabolite regions

JABBNL010000001 (original name was: JABBNL010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Nitrate_reductase	E-MGC	91,473	117,917	Nitrate reductase E. coli	NIR	60%

JABBNL010000002 (original name was: JABBNL010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_AA_metabolism	Putative	357,073	394,349

JABBNL010000006 (original name was: JABBNL010000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 42.1	fatty_acids-unassigned,Putrescine2spermidine	Aliphatic_amine	54,518	85,971	Acetate to butyrate C. sporogenes	BUT	50%

JABBNL010000007 (original name was: JABBNL010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 43.1	Fumarate2succinate,TPP_AA_metabolism	Putative	161,759	204,312	Acetate to butyrate C. sporogenes	BUT	33%

JABBNL010000008 (original name was: JABBNL010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	fatty_acids-unassigned	Putative	52,212	77,585	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: JABBNL010000010 (original name was: JABBNL010000010.1); JABBNL010000011 (original name was: JABBNL010000011.1); JABBNL010000012 (original name was: JABBNL010000012.1); JABBNL010000013 (original name was: JABBNL010000013.1); JABBNL010000014 (original name was: JABBNL010000014.1); JABBNL010000015 (original name was: JABBNL010000015.1); JABBNL010000016 (original name was: JABBNL010000016.1); JABBNL010000017 (original name was: JABBNL010000017.1); JABBNL010000018 (original name was: JABBNL010000018.1); JABBNL010000019 (original name was: JABBNL010000019.1); JABBNL010000020 (original name was: JABBNL010000020.1); JABBNL010000021 (original name was: JABBNL010000021.1); JABBNL010000022 (original name was: JABBNL010000022.1); JABBNL010000023 (original name was: JABBNL010000023.1); JABBNL010000024 (original name was: JABBNL010000024.1); JABBNL010000025 (original name was: JABBNL010000025.1); JABBNL010000026 (original name was: JABBNL010000026.1); JABBNL010000027 (original name was: JABBNL010000027.1); JABBNL010000028 (original name was: JABBNL010000028.1); JABBNL010000029 (original name was: JABBNL010000029.1); JABBNL010000030 (original name was: JABBNL010000030.1); JABBNL010000031 (original name was: JABBNL010000031.1); JABBNL010000032 (original name was: JABBNL010000032.1); JABBNL010000033 (original name was: JABBNL010000033.1); JABBNL010000034 (original name was: JABBNL010000034.1); JABBNL010000035 (original name was: JABBNL010000035.1); JABBNL010000036 (original name was: JABBNL010000036.1); JABBNL010000037 (original name was: JABBNL010000037.1); JABBNL010000038 (original name was: JABBNL010000038.1); JABBNL010000039 (original name was: JABBNL010000039.1); JABBNL010000003 (original name was: JABBNL010000003.1); JABBNL010000040 (original name was: JABBNL010000040.1); JABBNL010000041 (original name was: JABBNL010000041.1); JABBNL010000042 (original name was: JABBNL010000042.1); JABBNL010000043 (original name was: JABBNL010000043.1); JABBNL010000044 (original name was: JABBNL010000044.1); JABBNL010000045 (original name was: JABBNL010000045.1); JABBNL010000004 (original name was: JABBNL010000004.1); JABBNL010000005 (original name was: JABBNL010000005.1); JABBNL010000009 (original name was: JABBNL010000009.1)

Compact view

c00001_JABBNL0.. - Region 1 - Nitrate_reductase

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Location: 91,473 - 117,917 nt. (total: 26,445 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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c00022_JABBNL0.. - Region 1 - TPP_AA_metabolism

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Location: 357,073 - 394,349 nt. (total: 37,277 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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KnownClusterBlast

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No matches found.

c00042_JABBNL0.. - Region 1 - Putrescine2spermidine,fatty_acids-unassigned

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Location: 54,518 - 85,971 nt. (total: 31,454 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

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regulatory genes

resistance genes

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c00043_JABBNL0.. - Region 1 - Fumarate2succinate,TPP_AA_metabolism

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Location: 161,759 - 204,312 nt. (total: 42,554 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00044_JABBNL0.. - Region 1 - fatty_acids-unassigned

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Location: 52,212 - 77,585 nt. (total: 25,374 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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regulatory genes

resistance genes

encapsulation genes

electron transport genes

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