GCA_013186645.1 - 7 region(s)

Identified primary metabolite regions

JABFHE010000011 (original name was: JABFHE010000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	fatty_acids-unassigned	Putative	49,349	102,173

JABFHE010000012 (original name was: JABFHE010000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	hydroxybenzoate2phenol	Aromatic	6,179	28,217	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

JABFHE010000016 (original name was: JABFHE010000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	histidine2glutamate_hutHGIU_operon	Other	1	21,005	Histidine to glutamate K. pneumoniae	GLU	60%

JABFHE010000001 (original name was: JABFHE010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	fatty_acids-unassigned	Putative	101,600	127,032	Acetate to butyrate C. sporogenes	BUT	33%

JABFHE010000002 (original name was: JABFHE010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Nitrate_reductase,Putrescine2spermidine	Aliphatic_amine	149,995	196,051	Nitrate reductase E. coli	NIR	60%

JABFHE010000003 (original name was: JABFHE010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	fatty_acids-unassigned	Putative	40,505	63,741	Acetate to butyrate C. sporogenes	BUT	50%

JABFHE010000004 (original name was: JABFHE010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 43.1	Fumarate2succinate,TPP_fatty_acids,TPP_AA_metabolism	Putative	244,936	279,341	Acetate to butyrate C. sporogenes	BUT	33%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 2.1	fatty_acids-unassigned	Putative	49,349	102,173
Region 3.1	hydroxybenzoate2phenol	Aromatic	6,179	28,217	hydroxybenzoate2phenol K. pneumoniae	PHE	100%
Region 7.1	histidine2glutamate_hutHGIU_operon	Other	1	21,005	Histidine to glutamate K. pneumoniae	GLU	60%
Region 11.1	fatty_acids-unassigned	Putative	101,600	127,032	Acetate to butyrate C. sporogenes	BUT	33%
Region 22.1	Nitrate_reductase,Putrescine2spermidine	Aliphatic_amine	149,995	196,051	Nitrate reductase E. coli	NIR	60%
Region 33.1	fatty_acids-unassigned	Putative	40,505	63,741	Acetate to butyrate C. sporogenes	BUT	50%
Region 43.1	Fumarate2succinate,TPP_fatty_acids,TPP_AA_metabolism	Putative	244,936	279,341	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: JABFHE010000010 (original name was: JABFHE010000010.1); JABFHE010000013 (original name was: JABFHE010000013.1); JABFHE010000014 (original name was: JABFHE010000014.1); JABFHE010000015 (original name was: JABFHE010000015.1); JABFHE010000017 (original name was: JABFHE010000017.1); JABFHE010000018 (original name was: JABFHE010000018.1); JABFHE010000019 (original name was: JABFHE010000019.1); JABFHE010000020 (original name was: JABFHE010000020.1); JABFHE010000021 (original name was: JABFHE010000021.1); JABFHE010000022 (original name was: JABFHE010000022.1); JABFHE010000023 (original name was: JABFHE010000023.1); JABFHE010000024 (original name was: JABFHE010000024.1); JABFHE010000025 (original name was: JABFHE010000025.1); JABFHE010000026 (original name was: JABFHE010000026.1); JABFHE010000027 (original name was: JABFHE010000027.1); JABFHE010000028 (original name was: JABFHE010000028.1); JABFHE010000029 (original name was: JABFHE010000029.1); JABFHE010000030 (original name was: JABFHE010000030.1); JABFHE010000031 (original name was: JABFHE010000031.1); JABFHE010000032 (original name was: JABFHE010000032.1); JABFHE010000033 (original name was: JABFHE010000033.1); JABFHE010000034 (original name was: JABFHE010000034.1); JABFHE010000035 (original name was: JABFHE010000035.1); JABFHE010000036 (original name was: JABFHE010000036.1); JABFHE010000037 (original name was: JABFHE010000037.1); JABFHE010000038 (original name was: JABFHE010000038.1); JABFHE010000039 (original name was: JABFHE010000039.1); JABFHE010000040 (original name was: JABFHE010000040.1); JABFHE010000041 (original name was: JABFHE010000041.1); JABFHE010000042 (original name was: JABFHE010000042.1); JABFHE010000043 (original name was: JABFHE010000043.1); JABFHE010000044 (original name was: JABFHE010000044.1); JABFHE010000045 (original name was: JABFHE010000045.1); JABFHE010000046 (original name was: JABFHE010000046.1); JABFHE010000047 (original name was: JABFHE010000047.1); JABFHE010000048 (original name was: JABFHE010000048.1); JABFHE010000005 (original name was: JABFHE010000005.1); JABFHE010000006 (original name was: JABFHE010000006.1); JABFHE010000007 (original name was: JABFHE010000007.1); JABFHE010000008 (original name was: JABFHE010000008.1); JABFHE010000009 (original name was: JABFHE010000009.1)

Compact view

c00002_JABFHE0.. - Region 1 - fatty_acids-unassigned

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Location: 49,349 - 102,173 nt. (total: 52,825 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Similar known gene clusters

No matches found.

c00003_JABFHE0.. - Region 1 - hydroxybenzoate2phenol

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Location: 6,179 - 28,217 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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core biosynthetic genes

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resistance genes

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c00007_JABFHE0.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 1 - 21,005 nt. (total: 21,005 nt) Show pHMM detection rules used

Region on contig edge.

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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c00011_JABFHE0.. - Region 1 - fatty_acids-unassigned

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Location: 101,600 - 127,032 nt. (total: 25,433 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00022_JABFHE0.. - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 149,995 - 196,051 nt. (total: 46,057 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00033_JABFHE0.. - Region 1 - fatty_acids-unassigned

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Location: 40,505 - 63,741 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00043_JABFHE0.. - Region 1 - Fumarate2succinate,TPP_AA_metabolism,TPP_fatty_acids

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Location: 244,936 - 279,341 nt. (total: 34,406 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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