GCA_013266935.1 - 8 region(s)

Identified primary metabolite regions

JABRVH010000010 (original name was: JABRVH010000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	fatty_acids-unassigned	Putative	94,629	147,479

JABRVH010000018 (original name was: JABRVH010000018.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Nitrate_reductase	E-MGC	149,520	175,907	Nitrate reductase E. coli	NIR	60%

JABRVH010000024 (original name was: JABRVH010000024.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	fatty_acids-unassigned	Putative	100,896	118,532	Acetate to butyrate C. sporogenes	BUT	33%

JABRVH010000026 (original name was: JABRVH010000026.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	fatty_acids-unassigned	Putative	170,357	193,593	Acetate to butyrate C. sporogenes	BUT	50%

JABRVH010000037 (original name was: JABRVH010000037.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	histidine2glutamate_hutHGIU_operon	Other	1	22,431	Histidine to glutamate K. pneumoniae	GLU	60%

JABRVH010000004 (original name was: JABRVH010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	hydroxybenzoate2phenol	Aromatic	1	15,430	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

JABRVH010000040 (original name was: JABRVH010000040.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	Putrescine2spermidine	Aliphatic_amine	1	11,869	Arginine2putrescine R. gnavus	PUTR	40%

JABRVH010000055 (original name was: JABRVH010000055.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 51.1	Fumarate2succinate,TPP_fatty_acids,TPP_AA_metabolism	Putative	31,096	65,497	Acetate to butyrate C. sporogenes	BUT	33%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 2.1	fatty_acids-unassigned	Putative	94,629	147,479
Region 10.1	Nitrate_reductase	E-MGC	149,520	175,907	Nitrate reductase E. coli	NIR	60%
Region 17.1	fatty_acids-unassigned	Putative	100,896	118,532	Acetate to butyrate C. sporogenes	BUT	33%
Region 19.1	fatty_acids-unassigned	Putative	170,357	193,593	Acetate to butyrate C. sporogenes	BUT	50%
Region 31.1	histidine2glutamate_hutHGIU_operon	Other	1	22,431	Histidine to glutamate K. pneumoniae	GLU	60%
Region 34.1	hydroxybenzoate2phenol	Aromatic	1	15,430	hydroxybenzoate2phenol K. pneumoniae	PHE	100%
Region 35.1	Putrescine2spermidine	Aliphatic_amine	1	11,869	Arginine2putrescine R. gnavus	PUTR	40%
Region 51.1	Fumarate2succinate,TPP_fatty_acids,TPP_AA_metabolism	Putative	31,096	65,497	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: JABRVH010000001 (original name was: JABRVH010000001.1); JABRVH010000011 (original name was: JABRVH010000011.1); JABRVH010000012 (original name was: JABRVH010000012.1); JABRVH010000013 (original name was: JABRVH010000013.1); JABRVH010000014 (original name was: JABRVH010000014.1); JABRVH010000015 (original name was: JABRVH010000015.1); JABRVH010000016 (original name was: JABRVH010000016.1); JABRVH010000017 (original name was: JABRVH010000017.1); JABRVH010000019 (original name was: JABRVH010000019.1); JABRVH010000002 (original name was: JABRVH010000002.1); JABRVH010000020 (original name was: JABRVH010000020.1); JABRVH010000021 (original name was: JABRVH010000021.1); JABRVH010000022 (original name was: JABRVH010000022.1); JABRVH010000023 (original name was: JABRVH010000023.1); JABRVH010000025 (original name was: JABRVH010000025.1); JABRVH010000027 (original name was: JABRVH010000027.1); JABRVH010000028 (original name was: JABRVH010000028.1); JABRVH010000029 (original name was: JABRVH010000029.1); JABRVH010000003 (original name was: JABRVH010000003.1); JABRVH010000030 (original name was: JABRVH010000030.1); JABRVH010000031 (original name was: JABRVH010000031.1); JABRVH010000032 (original name was: JABRVH010000032.1); JABRVH010000033 (original name was: JABRVH010000033.1); JABRVH010000034 (original name was: JABRVH010000034.1); JABRVH010000035 (original name was: JABRVH010000035.1); JABRVH010000036 (original name was: JABRVH010000036.1); JABRVH010000038 (original name was: JABRVH010000038.1); JABRVH010000039 (original name was: JABRVH010000039.1); JABRVH010000041 (original name was: JABRVH010000041.1); JABRVH010000042 (original name was: JABRVH010000042.1); JABRVH010000043 (original name was: JABRVH010000043.1); JABRVH010000044 (original name was: JABRVH010000044.1); JABRVH010000045 (original name was: JABRVH010000045.1); JABRVH010000046 (original name was: JABRVH010000046.1); JABRVH010000047 (original name was: JABRVH010000047.1); JABRVH010000048 (original name was: JABRVH010000048.1); JABRVH010000049 (original name was: JABRVH010000049.1); JABRVH010000005 (original name was: JABRVH010000005.1); JABRVH010000050 (original name was: JABRVH010000050.1); JABRVH010000051 (original name was: JABRVH010000051.1); JABRVH010000052 (original name was: JABRVH010000052.1); JABRVH010000053 (original name was: JABRVH010000053.1); JABRVH010000054 (original name was: JABRVH010000054.1); JABRVH010000056 (original name was: JABRVH010000056.1); JABRVH010000057 (original name was: JABRVH010000057.1); JABRVH010000058 (original name was: JABRVH010000058.1); JABRVH010000059 (original name was: JABRVH010000059.1); JABRVH010000006 (original name was: JABRVH010000006.1); JABRVH010000060 (original name was: JABRVH010000060.1); JABRVH010000061 (original name was: JABRVH010000061.1); JABRVH010000062 (original name was: JABRVH010000062.1); JABRVH010000064 (original name was: JABRVH010000064.1); JABRVH010000065 (original name was: JABRVH010000065.1); JABRVH010000066 (original name was: JABRVH010000066.1); JABRVH010000067 (original name was: JABRVH010000067.1); JABRVH010000068 (original name was: JABRVH010000068.1); JABRVH010000069 (original name was: JABRVH010000069.1); JABRVH010000007 (original name was: JABRVH010000007.1); JABRVH010000071 (original name was: JABRVH010000071.1); JABRVH010000072 (original name was: JABRVH010000072.1); JABRVH010000074 (original name was: JABRVH010000074.1); JABRVH010000075 (original name was: JABRVH010000075.1); JABRVH010000076 (original name was: JABRVH010000076.1); JABRVH010000077 (original name was: JABRVH010000077.1); JABRVH010000008 (original name was: JABRVH010000008.1); JABRVH010000083 (original name was: JABRVH010000083.1); JABRVH010000009 (original name was: JABRVH010000009.1); JABRVH010000090 (original name was: JABRVH010000090.1)

Compact view

c00002_JABRVH0.. - Region 1 - fatty_acids-unassigned

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Location: 94,629 - 147,479 nt. (total: 52,851 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00010_JABRVH0.. - Region 1 - Nitrate_reductase

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Location: 149,520 - 175,907 nt. (total: 26,388 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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c00017_JABRVH0.. - Region 1 - fatty_acids-unassigned

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Location: 100,896 - 118,532 nt. (total: 17,637 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00019_JABRVH0.. - Region 1 - fatty_acids-unassigned

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Location: 170,357 - 193,593 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00031_JABRVH0.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 1 - 22,431 nt. (total: 22,431 nt) Show pHMM detection rules used

Region on contig edge.

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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c00034_JABRVH0.. - Region 1 - hydroxybenzoate2phenol

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Location: 1 - 15,430 nt. (total: 15,430 nt) Show pHMM detection rules used

Region on contig edge.

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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c00035_JABRVH0.. - Region 1 - Putrescine2spermidine

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Location: 1 - 11,869 nt. (total: 11,869 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00051_JABRVH0.. - Region 1 - Fumarate2succinate,TPP_AA_metabolism,TPP_fatty_acids

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Location: 31,096 - 65,497 nt. (total: 34,402 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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