GCA_013267025.1 - 9 region(s)

Identified primary metabolite regions

JABRVC010000012 (original name was: JABRVC010000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	fatty_acids-unassigned	Putative	177,012	200,248	Acetate to butyrate C. sporogenes	BUT	50%

JABRVC010000015 (original name was: JABRVC010000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	fatty_acids-unassigned	Putative	221,072	273,914

JABRVC010000019 (original name was: JABRVC010000019.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	hydroxybenzoate2phenol	Aromatic	139,487	161,525	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

JABRVC010000002 (original name was: JABRVC010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	TPP_AA_metabolism	Putative	137,415	160,706
Region 12.2	Fumarate2succinate	SCFA	218,271	240,795	Acetate to butyrate C. sporogenes	BUT	33%

JABRVC010000021 (original name was: JABRVC010000021.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	histidine2glutamate_hutHGIU_operon	Other	8,406	33,817	Histidine to glutamate K. pneumoniae	GLU	60%

JABRVC010000039 (original name was: JABRVC010000039.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	fatty_acids-unassigned	Putative	100,804	126,236	Acetate to butyrate C. sporogenes	BUT	33%

JABRVC010000040 (original name was: JABRVC010000040.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	Nitrate_reductase	E-MGC	56,769	79,144	Nitrate reductase E. coli	NIR	60%

JABRVC010000008 (original name was: JABRVC010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 76.1	Putrescine2spermidine	Aliphatic_amine	3,009	23,839	Arginine2putrescine R. gnavus	PUTR	40%

No primary metabolite regions were found in these records:: JABRVC010000001 (original name was: JABRVC010000001.1); JABRVC010000010 (original name was: JABRVC010000010.1); JABRVC010000011 (original name was: JABRVC010000011.1); JABRVC010000013 (original name was: JABRVC010000013.1); JABRVC010000014 (original name was: JABRVC010000014.1); JABRVC010000016 (original name was: JABRVC010000016.1); JABRVC010000017 (original name was: JABRVC010000017.1); JABRVC010000018 (original name was: JABRVC010000018.1); JABRVC010000020 (original name was: JABRVC010000020.1); JABRVC010000022 (original name was: JABRVC010000022.1); JABRVC010000023 (original name was: JABRVC010000023.1); JABRVC010000024 (original name was: JABRVC010000024.1); JABRVC010000025 (original name was: JABRVC010000025.1); JABRVC010000026 (original name was: JABRVC010000026.1); JABRVC010000027 (original name was: JABRVC010000027.1); JABRVC010000028 (original name was: JABRVC010000028.1); JABRVC010000029 (original name was: JABRVC010000029.1); JABRVC010000003 (original name was: JABRVC010000003.1); JABRVC010000030 (original name was: JABRVC010000030.1); JABRVC010000031 (original name was: JABRVC010000031.1); JABRVC010000032 (original name was: JABRVC010000032.1); JABRVC010000033 (original name was: JABRVC010000033.1); JABRVC010000034 (original name was: JABRVC010000034.1); JABRVC010000035 (original name was: JABRVC010000035.1); JABRVC010000036 (original name was: JABRVC010000036.1); JABRVC010000037 (original name was: JABRVC010000037.1); JABRVC010000038 (original name was: JABRVC010000038.1); JABRVC010000004 (original name was: JABRVC010000004.1); JABRVC010000041 (original name was: JABRVC010000041.1); JABRVC010000042 (original name was: JABRVC010000042.1); JABRVC010000043 (original name was: JABRVC010000043.1); JABRVC010000044 (original name was: JABRVC010000044.1); JABRVC010000045 (original name was: JABRVC010000045.1); JABRVC010000046 (original name was: JABRVC010000046.1); JABRVC010000047 (original name was: JABRVC010000047.1); JABRVC010000048 (original name was: JABRVC010000048.1); JABRVC010000049 (original name was: JABRVC010000049.1); JABRVC010000005 (original name was: JABRVC010000005.1); JABRVC010000050 (original name was: JABRVC010000050.1); JABRVC010000051 (original name was: JABRVC010000051.1); JABRVC010000053 (original name was: JABRVC010000053.1); JABRVC010000054 (original name was: JABRVC010000054.1); JABRVC010000055 (original name was: JABRVC010000055.1); JABRVC010000056 (original name was: JABRVC010000056.1); JABRVC010000057 (original name was: JABRVC010000057.1); JABRVC010000058 (original name was: JABRVC010000058.1); JABRVC010000059 (original name was: JABRVC010000059.1); JABRVC010000006 (original name was: JABRVC010000006.1); JABRVC010000060 (original name was: JABRVC010000060.1); JABRVC010000061 (original name was: JABRVC010000061.1); JABRVC010000062 (original name was: JABRVC010000062.1); JABRVC010000063 (original name was: JABRVC010000063.1); JABRVC010000064 (original name was: JABRVC010000064.1); JABRVC010000065 (original name was: JABRVC010000065.1); JABRVC010000067 (original name was: JABRVC010000067.1); JABRVC010000068 (original name was: JABRVC010000068.1); JABRVC010000069 (original name was: JABRVC010000069.1); JABRVC010000007 (original name was: JABRVC010000007.1); JABRVC010000070 (original name was: JABRVC010000070.1); JABRVC010000071 (original name was: JABRVC010000071.1); JABRVC010000072 (original name was: JABRVC010000072.1); JABRVC010000073 (original name was: JABRVC010000073.1); JABRVC010000074 (original name was: JABRVC010000074.1); JABRVC010000075 (original name was: JABRVC010000075.1); JABRVC010000076 (original name was: JABRVC010000076.1); JABRVC010000077 (original name was: JABRVC010000077.1); JABRVC010000078 (original name was: JABRVC010000078.1); JABRVC010000079 (original name was: JABRVC010000079.1); JABRVC010000080 (original name was: JABRVC010000080.1); JABRVC010000084 (original name was: JABRVC010000084.1); JABRVC010000086 (original name was: JABRVC010000086.1); JABRVC010000087 (original name was: JABRVC010000087.1); JABRVC010000088 (original name was: JABRVC010000088.1); JABRVC010000089 (original name was: JABRVC010000089.1); JABRVC010000009 (original name was: JABRVC010000009.1); JABRVC010000090 (original name was: JABRVC010000090.1)

Compact view

c00004_JABRVC0.. - Region 1 - fatty_acids-unassigned

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Location: 177,012 - 200,248 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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c00007_JABRVC0.. - Region 1 - fatty_acids-unassigned

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Location: 221,072 - 273,914 nt. (total: 52,843 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

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regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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No matches found.

c00011_JABRVC0.. - Region 1 - hydroxybenzoate2phenol

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Location: 139,487 - 161,525 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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c00012_JABRVC0.. - Region 1 - TPP_AA_metabolism

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Location: 137,415 - 160,706 nt. (total: 23,292 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00012_JABRVC0.. - Region 2 - Fumarate2succinate

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Location: 218,271 - 240,795 nt. (total: 22,525 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

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c00014_JABRVC0.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 8,406 - 33,817 nt. (total: 25,412 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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c00033_JABRVC0.. - Region 1 - fatty_acids-unassigned

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Location: 100,804 - 126,236 nt. (total: 25,433 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

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resistance genes

encapsulation genes

electron transport genes

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c00035_JABRVC0.. - Region 1 - Nitrate_reductase

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Location: 56,769 - 79,144 nt. (total: 22,376 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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c00076_JABRVC0.. - Region 1 - Putrescine2spermidine

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Location: 3,009 - 23,839 nt. (total: 20,831 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

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regulatory genes

resistance genes

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