GCA_013267035.1 - 18 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

JABRVE010000010 (original name was: JABRVE010000010.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	terpene	10,159	30,962

JABRVE010000105 (original name was: JABRVE010000105.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	terpene	1	14,086

JABRVE010000110 (original name was: JABRVE010000110.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	NRPS	1	9,969	surfactin	NRP:Lipopeptide	8%

JABRVE010000115 (original name was: JABRVE010000115.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	NRPS	1	20,787	surfactin	NRP:Lipopeptide	39%

JABRVE010000012 (original name was: JABRVE010000012.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 24.1	CDPS	10,867	31,622

JABRVE010000122 (original name was: JABRVE010000122.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	NRPS,betalactone	1,397	29,355	fengycin	NRP	80%

JABRVE010000124 (original name was: JABRVE010000124.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	NRPS	1	10,293	plipastatin	NRP	23%

JABRVE010000138 (original name was: JABRVE010000138.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	NRPS-like	1	25,855	bacillibactin	NRP	84%

JABRVE010000168 (original name was: JABRVE010000168.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 75.1	NRPS	1	3,230

JABRVE010000190 (original name was: JABRVE010000190.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 99.1	RRE-containing	1	1,586

JABRVE010000022 (original name was: JABRVE010000022.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 122.1	NRPS	56,040	84,719	surfactin	NRP:Lipopeptide	43%

JABRVE010000004 (original name was: JABRVE010000004.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 141.1	other	1	25,132	bacilysin	Other	100%
Region 141.2	sactipeptide	28,436	40,039	subtilosin A	RiPP:Thiopeptide	100%

JABRVE010000041 (original name was: JABRVE010000041.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 143.1	T3PKS	1	21,859

JABRVE010000053 (original name was: JABRVE010000053.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 156.1	NRPS,transAT-PKS,T3PKS,PKS-like	2	85,440	bacillaene	Polyketide + NRP	92%

JABRVE010000078 (original name was: JABRVE010000078.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 183.1	RiPP-like	1	7,803

JABRVE010000088 (original name was: JABRVE010000088.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 194.1	lanthipeptide-class-i	1	9,913	entianin	RiPP:Lanthipeptide	90%

JABRVE010000092 (original name was: JABRVE010000092.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 199.1	NRPS	1	14,805	fengycin	NRP	26%

Region	Type	From	To	Most similar known cluster	Similarity
Region 2.1	terpene	10,159	30,962
Region 8.1	terpene	1	14,086
Region 14.1	NRPS	1	9,969	surfactin	NRP:Lipopeptide	8%
Region 19.1	NRPS	1	20,787	surfactin	NRP:Lipopeptide	39%
Region 24.1	CDPS	10,867	31,622
Region 27.1	NRPS,betalactone	1,397	29,355	fengycin	NRP	80%
Region 29.1	NRPS	1	10,293	plipastatin	NRP	23%
Region 44.1	NRPS-like	1	25,855	bacillibactin	NRP	84%
Region 75.1	NRPS	1	3,230
Region 99.1	RRE-containing	1	1,586
Region 122.1	NRPS	56,040	84,719	surfactin	NRP:Lipopeptide	43%
Region 141.1	other	1	25,132	bacilysin	Other	100%
Region 141.2	sactipeptide	28,436	40,039	subtilosin A	RiPP:Thiopeptide	100%
Region 143.1	T3PKS	1	21,859
Region 156.1	NRPS,transAT-PKS,T3PKS,PKS-like	2	85,440	bacillaene	Polyketide + NRP	92%
Region 183.1	RiPP-like	1	7,803
Region 194.1	lanthipeptide-class-i	1	9,913	entianin	RiPP:Lanthipeptide	90%
Region 199.1	NRPS	1	14,805	fengycin	NRP	26%

No secondary metabolite regions were found in these records:: JABRVE010000001 (original name was: JABRVE010000001.1); JABRVE010000100 (original name was: JABRVE010000100.1); JABRVE010000101 (original name was: JABRVE010000101.1); JABRVE010000102 (original name was: JABRVE010000102.1); JABRVE010000103 (original name was: JABRVE010000103.1); JABRVE010000104 (original name was: JABRVE010000104.1); JABRVE010000106 (original name was: JABRVE010000106.1); JABRVE010000107 (original name was: JABRVE010000107.1); JABRVE010000108 (original name was: JABRVE010000108.1); JABRVE010000109 (original name was: JABRVE010000109.1); JABRVE010000011 (original name was: JABRVE010000011.1); JABRVE010000111 (original name was: JABRVE010000111.1); JABRVE010000112 (original name was: JABRVE010000112.1); JABRVE010000113 (original name was: JABRVE010000113.1); JABRVE010000114 (original name was: JABRVE010000114.1); JABRVE010000116 (original name was: JABRVE010000116.1); JABRVE010000117 (original name was: JABRVE010000117.1); JABRVE010000118 (original name was: JABRVE010000118.1); JABRVE010000119 (original name was: JABRVE010000119.1); JABRVE010000120 (original name was: JABRVE010000120.1); JABRVE010000121 (original name was: JABRVE010000121.1); JABRVE010000123 (original name was: JABRVE010000123.1); JABRVE010000125 (original name was: JABRVE010000125.1); JABRVE010000126 (original name was: JABRVE010000126.1); JABRVE010000127 (original name was: JABRVE010000127.1); JABRVE010000128 (original name was: JABRVE010000128.1); JABRVE010000129 (original name was: JABRVE010000129.1); JABRVE010000013 (original name was: JABRVE010000013.1); JABRVE010000130 (original name was: JABRVE010000130.1); JABRVE010000131 (original name was: JABRVE010000131.1); JABRVE010000132 (original name was: JABRVE010000132.1); JABRVE010000133 (original name was: JABRVE010000133.1); JABRVE010000134 (original name was: JABRVE010000134.1); JABRVE010000135 (original name was: JABRVE010000135.1); JABRVE010000136 (original name was: JABRVE010000136.1); JABRVE010000137 (original name was: JABRVE010000137.1); JABRVE010000139 (original name was: JABRVE010000139.1); JABRVE010000014 (original name was: JABRVE010000014.1); JABRVE010000140 (original name was: JABRVE010000140.1); JABRVE010000141 (original name was: JABRVE010000141.1); JABRVE010000142 (original name was: JABRVE010000142.1); JABRVE010000143 (original name was: JABRVE010000143.1); JABRVE010000144 (original name was: JABRVE010000144.1); JABRVE010000145 (original name was: JABRVE010000145.1); JABRVE010000147 (original name was: JABRVE010000147.1); JABRVE010000148 (original name was: JABRVE010000148.1); JABRVE010000149 (original name was: JABRVE010000149.1); JABRVE010000015 (original name was: JABRVE010000015.1); JABRVE010000150 (original name was: JABRVE010000150.1); JABRVE010000151 (original name was: JABRVE010000151.1); JABRVE010000152 (original name was: JABRVE010000152.1); JABRVE010000153 (original name was: JABRVE010000153.1); JABRVE010000154 (original name was: JABRVE010000154.1); JABRVE010000155 (original name was: JABRVE010000155.1); JABRVE010000156 (original name was: JABRVE010000156.1); JABRVE010000157 (original name was: JABRVE010000157.1); JABRVE010000158 (original name was: JABRVE010000158.1); JABRVE010000159 (original name was: JABRVE010000159.1); JABRVE010000016 (original name was: JABRVE010000016.1); JABRVE010000160 (original name was: JABRVE010000160.1); JABRVE010000161 (original name was: JABRVE010000161.1); JABRVE010000162 (original name was: JABRVE010000162.1); JABRVE010000164 (original name was: JABRVE010000164.1); JABRVE010000165 (original name was: JABRVE010000165.1); JABRVE010000166 (original name was: JABRVE010000166.1); JABRVE010000167 (original name was: JABRVE010000167.1); JABRVE010000169 (original name was: JABRVE010000169.1); JABRVE010000017 (original name was: JABRVE010000017.1); JABRVE010000170 (original name was: JABRVE010000170.1); JABRVE010000171 (original name was: JABRVE010000171.1); JABRVE010000172 (original name was: JABRVE010000172.1); JABRVE010000173 (original name was: JABRVE010000173.1); JABRVE010000174 (original name was: JABRVE010000174.1); JABRVE010000175 (original name was: JABRVE010000175.1); JABRVE010000176 (original name was: JABRVE010000176.1); JABRVE010000177 (original name was: JABRVE010000177.1); JABRVE010000178 (original name was: JABRVE010000178.1); JABRVE010000179 (original name was: JABRVE010000179.1); JABRVE010000018 (original name was: JABRVE010000018.1); JABRVE010000180 (original name was: JABRVE010000180.1); JABRVE010000181 (original name was: JABRVE010000181.1); JABRVE010000182 (original name was: JABRVE010000182.1); JABRVE010000183 (original name was: JABRVE010000183.1); JABRVE010000184 (original name was: JABRVE010000184.1); JABRVE010000185 (original name was: JABRVE010000185.1); JABRVE010000186 (original name was: JABRVE010000186.1); JABRVE010000187 (original name was: JABRVE010000187.1); JABRVE010000188 (original name was: JABRVE010000188.1); JABRVE010000019 (original name was: JABRVE010000019.1); JABRVE010000191 (original name was: JABRVE010000191.1); JABRVE010000192 (original name was: JABRVE010000192.1); JABRVE010000194 (original name was: JABRVE010000194.1); JABRVE010000196 (original name was: JABRVE010000196.1); JABRVE010000197 (original name was: JABRVE010000197.1); JABRVE010000199 (original name was: JABRVE010000199.1); JABRVE010000002 (original name was: JABRVE010000002.1); JABRVE010000020 (original name was: JABRVE010000020.1); JABRVE010000200 (original name was: JABRVE010000200.1); JABRVE010000201 (original name was: JABRVE010000201.1); JABRVE010000202 (original name was: JABRVE010000202.1); JABRVE010000205 (original name was: JABRVE010000205.1); JABRVE010000206 (original name was: JABRVE010000206.1); JABRVE010000207 (original name was: JABRVE010000207.1); JABRVE010000208 (original name was: JABRVE010000208.1); JABRVE010000209 (original name was: JABRVE010000209.1); JABRVE010000021 (original name was: JABRVE010000021.1); JABRVE010000212 (original name was: JABRVE010000212.1); JABRVE010000213 (original name was: JABRVE010000213.1); JABRVE010000214 (original name was: JABRVE010000214.1); JABRVE010000216 (original name was: JABRVE010000216.1); JABRVE010000219 (original name was: JABRVE010000219.1); JABRVE010000225 (original name was: JABRVE010000225.1); JABRVE010000023 (original name was: JABRVE010000023.1); JABRVE010000024 (original name was: JABRVE010000024.1); JABRVE010000025 (original name was: JABRVE010000025.1); JABRVE010000026 (original name was: JABRVE010000026.1); JABRVE010000027 (original name was: JABRVE010000027.1); JABRVE010000028 (original name was: JABRVE010000028.1); JABRVE010000029 (original name was: JABRVE010000029.1); JABRVE010000003 (original name was: JABRVE010000003.1); JABRVE010000030 (original name was: JABRVE010000030.1); JABRVE010000031 (original name was: JABRVE010000031.1); JABRVE010000032 (original name was: JABRVE010000032.1); JABRVE010000033 (original name was: JABRVE010000033.1); JABRVE010000034 (original name was: JABRVE010000034.1); JABRVE010000036 (original name was: JABRVE010000036.1); JABRVE010000037 (original name was: JABRVE010000037.1); JABRVE010000038 (original name was: JABRVE010000038.1); JABRVE010000039 (original name was: JABRVE010000039.1); JABRVE010000040 (original name was: JABRVE010000040.1); JABRVE010000042 (original name was: JABRVE010000042.1); JABRVE010000043 (original name was: JABRVE010000043.1); JABRVE010000044 (original name was: JABRVE010000044.1); JABRVE010000045 (original name was: JABRVE010000045.1); JABRVE010000046 (original name was: JABRVE010000046.1); JABRVE010000047 (original name was: JABRVE010000047.1); JABRVE010000048 (original name was: JABRVE010000048.1); JABRVE010000049 (original name was: JABRVE010000049.1); JABRVE010000005 (original name was: JABRVE010000005.1); JABRVE010000050 (original name was: JABRVE010000050.1); JABRVE010000051 (original name was: JABRVE010000051.1); JABRVE010000052 (original name was: JABRVE010000052.1); JABRVE010000054 (original name was: JABRVE010000054.1); JABRVE010000055 (original name was: JABRVE010000055.1); JABRVE010000056 (original name was: JABRVE010000056.1); JABRVE010000057 (original name was: JABRVE010000057.1); JABRVE010000058 (original name was: JABRVE010000058.1); JABRVE010000059 (original name was: JABRVE010000059.1); JABRVE010000006 (original name was: JABRVE010000006.1); JABRVE010000060 (original name was: JABRVE010000060.1); JABRVE010000061 (original name was: JABRVE010000061.1); JABRVE010000062 (original name was: JABRVE010000062.1); JABRVE010000063 (original name was: JABRVE010000063.1); JABRVE010000064 (original name was: JABRVE010000064.1); JABRVE010000065 (original name was: JABRVE010000065.1); JABRVE010000066 (original name was: JABRVE010000066.1); JABRVE010000067 (original name was: JABRVE010000067.1); JABRVE010000068 (original name was: JABRVE010000068.1); JABRVE010000069 (original name was: JABRVE010000069.1); JABRVE010000007 (original name was: JABRVE010000007.1); JABRVE010000070 (original name was: JABRVE010000070.1); JABRVE010000071 (original name was: JABRVE010000071.1); JABRVE010000072 (original name was: JABRVE010000072.1); JABRVE010000073 (original name was: JABRVE010000073.1); JABRVE010000074 (original name was: JABRVE010000074.1); JABRVE010000075 (original name was: JABRVE010000075.1); JABRVE010000076 (original name was: JABRVE010000076.1); JABRVE010000077 (original name was: JABRVE010000077.1); JABRVE010000079 (original name was: JABRVE010000079.1); JABRVE010000008 (original name was: JABRVE010000008.1); JABRVE010000080 (original name was: JABRVE010000080.1); JABRVE010000081 (original name was: JABRVE010000081.1); JABRVE010000082 (original name was: JABRVE010000082.1); JABRVE010000083 (original name was: JABRVE010000083.1); JABRVE010000084 (original name was: JABRVE010000084.1); JABRVE010000085 (original name was: JABRVE010000085.1); JABRVE010000086 (original name was: JABRVE010000086.1); JABRVE010000087 (original name was: JABRVE010000087.1); JABRVE010000089 (original name was: JABRVE010000089.1); JABRVE010000009 (original name was: JABRVE010000009.1); JABRVE010000090 (original name was: JABRVE010000090.1); JABRVE010000091 (original name was: JABRVE010000091.1); JABRVE010000093 (original name was: JABRVE010000093.1); JABRVE010000094 (original name was: JABRVE010000094.1); JABRVE010000095 (original name was: JABRVE010000095.1); JABRVE010000096 (original name was: JABRVE010000096.1); JABRVE010000097 (original name was: JABRVE010000097.1); JABRVE010000098 (original name was: JABRVE010000098.1); JABRVE010000099 (original name was: JABRVE010000099.1)

Compact view

c00002_JABRVE0.. - Region 1 - terpene

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Location: 10,159 - 30,962 nt. (total: 20,804 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00008_JABRVE0.. - Region 1 - terpene

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Location: 1 - 14,086 nt. (total: 14,086 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00014_JABRVE0.. - Region 1 - NRPS

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Location: 1 - 9,969 nt. (total: 9,969 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 9969:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - asp)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg14_2

Search NORINE for peptide: strict or relaxed

AMP-binding (470..864): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

AMP-binding (1501..1904): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHIGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

AMP-binding (2546..2888): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGNVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

c00019_JABRVE0.. - Region 1 - NRPS

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Location: 1 - 20,787 nt. (total: 20,787 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 20787:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg19_20

Search NORINE for peptide: strict or relaxed

AMP-binding (205..603): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGCVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

c00024_JABRVE0.. - Region 1 - CDPS

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Location: 10,867 - 31,622 nt. (total: 20,756 nt) Show pHMM detection rules used

CDPS: (CDPS or cycdipepsynth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00027_JABRVE0.. - Region 1 - NRPS,betalactone

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Location: 1,397 - 29,355 nt. (total: 27,959 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 1396 - 29355:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-tyr) + (ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg27_15

Search NORINE for peptide: strict or relaxed

AMP-binding (13..445): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gclhIAApvK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 40% (weak)

ctg27_19

Search NORINE for peptide: strict or relaxed

AMP-binding (459..852): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFYGITFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

ctg27_20

Search NORINE for peptide: strict or relaxed

AMP-binding (304..698): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DGTITAEVAK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

c00029_JABRVE0.. - Region 1 - NRPS

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Location: 1 - 10,293 nt. (total: 10,293 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 10293:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-val) + (pro - glu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg29_1

Search NORINE for peptide: strict or relaxed

AMP-binding (306..699): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DVFWIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

ctg29_2

Search NORINE for peptide: strict or relaxed

AMP-binding (469..866): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFIAHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 100% (strong)

AMP-binding (1500..1901): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWHFGSVEK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

c00044_JABRVE0.. - Region 1 - NRPS-like

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Location: 1 - 25,855 nt. (total: 25,855 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

c00075_JABRVE0.. - Region 1 - NRPS

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Location: 1 - 3,230 nt. (total: 3,230 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 3230:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg75_1

Search NORINE for peptide: strict or relaxed

AMP-binding (490..891): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWHFGGVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

c00099_JABRVE0.. - Region 1 - RRE-containing

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Location: 1 - 1,586 nt. (total: 1,586 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00122_JABRVE0.. - Region 1 - NRPS

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Location: 56,040 - 84,719 nt. (total: 28,680 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 56039 - 84719:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg122_71

Search NORINE for peptide: strict or relaxed

AMP-binding (466..867): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAKDLGVVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (1510..1908): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFMMGMVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

AMP-binding (2550..2892): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGNVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

c00141_JABRVE0.. - Region 1 - other

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Location: 1 - 25,132 nt. (total: 25,132 nt) Show pHMM detection rules used

Region on contig edge.

other: (LmbU or Neocarzinostat or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin or orf2_PTase)

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core biosynthetic genes

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KnownClusterBlast

Similar known gene clusters

c00141_JABRVE0.. - Region 2 - sactipeptide

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Location: 28,436 - 40,039 nt. (total: 11,604 nt) Show pHMM detection rules used

Region on contig edge.

sactipeptide: (subtilosin or thuricin or TIGR04404 or Subtilosin_A or skfc)

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KnownClusterBlast

Sactipeptides

Similar known gene clusters

Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.

c00143_JABRVE0.. - Region 1 - T3PKS

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Location: 1 - 21,859 nt. (total: 21,859 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00156_JABRVE0.. - Region 1 - NRPS,PKS-like,T3PKS,transAT-PKS

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Location: 2 - 85,440 nt. (total: 85,439 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
transAT-PKS: (cds(PKS_AT and not (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)) and (cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)) or cds(tra_KS and PP-binding)))
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)
PKS-like: (t2pks2 or ksIII)

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core biosynthetic genes

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 1 - 85440:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - ccmal - ohmal - mal) + (ccmal - mal - ohmal - mal - mal) + (ccmal - ohmal - mal - mal) + (X - ccmal - ccmal - ccmal) + (mal - mal - ccmal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 14419 - 85440:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - ccmal - ohmal - mal) + (ccmal - mal - ohmal - mal - mal) + (ccmal - ohmal - mal - mal) + (X - ccmal - ccmal - ccmal) + (mal - mal - ccmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg156_17

Search NORINE for peptide: strict or relaxed

AMP-binding (497..905): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVsnmAiIYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 60% (weak)

ctg156_20

Search NORINE for peptide: strict or relaxed

CAL_domain (61..472): pk

minowa: fatty_acid

Prediction, score:

fatty_acid: 14.2
NH2: 10.3
shikimic_acid: 0.0
Acetyl-CoA: 0.0
AHBA: 0.0

AMP-binding (1160..1555): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

ctg156_26

PKS_AT (4..288): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 66.7%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 95.0
inactive: 41.2
Methoxymalonyl-CoA: 29.1
Methylmalonyl-CoA: 22.1
Propionyl-CoA: 16.3
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ctg156_27

PKS_AT (7..293): pk

ATSignature: (unknown)

No matches above 50%

minowa: inactive

Prediction, score:

inactive: 30.0
Malonyl-CoA: 23.0
Benzoyl-CoA: 8.8
Isobutyryl-CoA: 8.4
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Methylmalonyl-CoA: 0.0
Methoxymalonyl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ctg156_29

PKS_AT (4..284): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 62.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 96.7
Methoxymalonyl-CoA: 50.0
inactive: 35.3
Methylmalonyl-CoA: 31.5
Propionyl-CoA: 22.2
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

c00183_JABRVE0.. - Region 1 - RiPP-like

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Location: 1 - 7,803 nt. (total: 7,803 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00194_JABRVE0.. - Region 1 - lanthipeptide-class-i

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Location: 1 - 9,913 nt. (total: 9,913 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg194_10 - Putative Class I

ctg194_7 leader / core peptide: MSKFDDFDLDVVKVSKQDSKITPQ - WKDhaEDhaLCDhbPGCVDhbGVLQDhbCFLQDhbIDhbCNCKIDhaK

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg194_7 - Class I

Cleavage pHMM score: 27.80

RODEO score: 29

Monoisotopic mass: 3346.7 Da

Molecular weight: 3349.0 Da

Number of bridges: 5

Alternative weights: (assuming N unmodified Ser/Thr residues); 3367.0 Da N = 1; 3385.0 Da N = 2; 3403.0 Da N = 3

c00199_JABRVE0.. - Region 1 - NRPS

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Location: 1 - 14,805 nt. (total: 14,805 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 14805:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-orn) + (tyr - D-thr) + (glu) + (glu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg199_2

Search NORINE for peptide: strict or relaxed

AMP-binding (469..870): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWHFGGiDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 90% (moderate)

ctg199_3

Search NORINE for peptide: strict or relaxed

AMP-binding (474..865): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DGTITAEVAK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

AMP-binding (1505..1903): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg199_4

Search NORINE for peptide: strict or relaxed

AMP-binding (204..609): orn

NRPSPredictor2: orn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGEIGSIDK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 100% (strong)