GCA_013267035.1 - 9 region(s)

Identified primary metabolite regions

JABRVE010000115 (original name was: JABRVE010000115.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	hydroxybenzoate2phenol	Aromatic	1	15,181	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

JABRVE010000179 (original name was: JABRVE010000179.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 87.1	fatty_acids-unassigned	Putative	1	9,775	Acetate to butyrate C. sporogenes	BUT	33%

JABRVE010000002 (original name was: JABRVE010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 106.1	histidine2glutamate_hutHGIU_operon	Other	1	21,084	Histidine to glutamate K. pneumoniae	GLU	60%

JABRVE010000003 (original name was: JABRVE010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 131.1	fatty_acids-unassigned	Putative	18,631	41,867	Acetate to butyrate C. sporogenes	BUT	50%

JABRVE010000004 (original name was: JABRVE010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 141.1	Putrescine2spermidine	Aliphatic_amine	16,491	37,321	Arginine2putrescine R. gnavus	PUTR	40%

JABRVE010000053 (original name was: JABRVE010000053.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 156.1	fatty_acids-unassigned	Putative	37,230	85,440

JABRVE010000062 (original name was: JABRVE010000062.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 166.1	Fumarate2succinate	SCFA	1	11,411

JABRVE010000079 (original name was: JABRVE010000079.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 184.1	Nitrate_reductase	E-MGC	1	22,342	Nitrate reductase E. coli	NIR	60%

JABRVE010000089 (original name was: JABRVE010000089.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 195.1	TPP_AA_metabolism	Putative	3,815	17,805

No primary metabolite regions were found in these records:: JABRVE010000001 (original name was: JABRVE010000001.1); JABRVE010000010 (original name was: JABRVE010000010.1); JABRVE010000100 (original name was: JABRVE010000100.1); JABRVE010000101 (original name was: JABRVE010000101.1); JABRVE010000102 (original name was: JABRVE010000102.1); JABRVE010000103 (original name was: JABRVE010000103.1); JABRVE010000104 (original name was: JABRVE010000104.1); JABRVE010000105 (original name was: JABRVE010000105.1); JABRVE010000106 (original name was: JABRVE010000106.1); JABRVE010000107 (original name was: JABRVE010000107.1); JABRVE010000108 (original name was: JABRVE010000108.1); JABRVE010000109 (original name was: JABRVE010000109.1); JABRVE010000011 (original name was: JABRVE010000011.1); JABRVE010000110 (original name was: JABRVE010000110.1); JABRVE010000111 (original name was: JABRVE010000111.1); JABRVE010000112 (original name was: JABRVE010000112.1); JABRVE010000113 (original name was: JABRVE010000113.1); JABRVE010000114 (original name was: JABRVE010000114.1); JABRVE010000116 (original name was: JABRVE010000116.1); JABRVE010000117 (original name was: JABRVE010000117.1); JABRVE010000118 (original name was: JABRVE010000118.1); JABRVE010000119 (original name was: JABRVE010000119.1); JABRVE010000012 (original name was: JABRVE010000012.1); JABRVE010000120 (original name was: JABRVE010000120.1); JABRVE010000121 (original name was: JABRVE010000121.1); JABRVE010000122 (original name was: JABRVE010000122.1); JABRVE010000123 (original name was: JABRVE010000123.1); JABRVE010000124 (original name was: JABRVE010000124.1); JABRVE010000125 (original name was: JABRVE010000125.1); JABRVE010000126 (original name was: JABRVE010000126.1); JABRVE010000127 (original name was: JABRVE010000127.1); JABRVE010000128 (original name was: JABRVE010000128.1); JABRVE010000129 (original name was: JABRVE010000129.1); JABRVE010000013 (original name was: JABRVE010000013.1); JABRVE010000130 (original name was: JABRVE010000130.1); JABRVE010000131 (original name was: JABRVE010000131.1); JABRVE010000132 (original name was: JABRVE010000132.1); JABRVE010000133 (original name was: JABRVE010000133.1); JABRVE010000134 (original name was: JABRVE010000134.1); JABRVE010000135 (original name was: JABRVE010000135.1); JABRVE010000136 (original name was: JABRVE010000136.1); JABRVE010000137 (original name was: JABRVE010000137.1); JABRVE010000138 (original name was: JABRVE010000138.1); JABRVE010000139 (original name was: JABRVE010000139.1); JABRVE010000014 (original name was: JABRVE010000014.1); JABRVE010000140 (original name was: JABRVE010000140.1); JABRVE010000141 (original name was: JABRVE010000141.1); JABRVE010000142 (original name was: JABRVE010000142.1); JABRVE010000143 (original name was: JABRVE010000143.1); JABRVE010000144 (original name was: JABRVE010000144.1); JABRVE010000145 (original name was: JABRVE010000145.1); JABRVE010000147 (original name was: JABRVE010000147.1); JABRVE010000148 (original name was: JABRVE010000148.1); JABRVE010000149 (original name was: JABRVE010000149.1); JABRVE010000015 (original name was: JABRVE010000015.1); JABRVE010000150 (original name was: JABRVE010000150.1); JABRVE010000151 (original name was: JABRVE010000151.1); JABRVE010000152 (original name was: JABRVE010000152.1); JABRVE010000153 (original name was: JABRVE010000153.1); JABRVE010000154 (original name was: JABRVE010000154.1); JABRVE010000155 (original name was: JABRVE010000155.1); JABRVE010000156 (original name was: JABRVE010000156.1); JABRVE010000157 (original name was: JABRVE010000157.1); JABRVE010000158 (original name was: JABRVE010000158.1); JABRVE010000159 (original name was: JABRVE010000159.1); JABRVE010000016 (original name was: JABRVE010000016.1); JABRVE010000160 (original name was: JABRVE010000160.1); JABRVE010000161 (original name was: JABRVE010000161.1); JABRVE010000162 (original name was: JABRVE010000162.1); JABRVE010000164 (original name was: JABRVE010000164.1); JABRVE010000165 (original name was: JABRVE010000165.1); JABRVE010000166 (original name was: JABRVE010000166.1); JABRVE010000167 (original name was: JABRVE010000167.1); JABRVE010000168 (original name was: JABRVE010000168.1); JABRVE010000169 (original name was: JABRVE010000169.1); JABRVE010000017 (original name was: JABRVE010000017.1); JABRVE010000170 (original name was: JABRVE010000170.1); JABRVE010000171 (original name was: JABRVE010000171.1); JABRVE010000172 (original name was: JABRVE010000172.1); JABRVE010000173 (original name was: JABRVE010000173.1); JABRVE010000174 (original name was: JABRVE010000174.1); JABRVE010000175 (original name was: JABRVE010000175.1); JABRVE010000176 (original name was: JABRVE010000176.1); JABRVE010000177 (original name was: JABRVE010000177.1); JABRVE010000178 (original name was: JABRVE010000178.1); JABRVE010000018 (original name was: JABRVE010000018.1); JABRVE010000180 (original name was: JABRVE010000180.1); JABRVE010000181 (original name was: JABRVE010000181.1); JABRVE010000182 (original name was: JABRVE010000182.1); JABRVE010000183 (original name was: JABRVE010000183.1); JABRVE010000184 (original name was: JABRVE010000184.1); JABRVE010000185 (original name was: JABRVE010000185.1); JABRVE010000186 (original name was: JABRVE010000186.1); JABRVE010000187 (original name was: JABRVE010000187.1); JABRVE010000188 (original name was: JABRVE010000188.1); JABRVE010000019 (original name was: JABRVE010000019.1); JABRVE010000190 (original name was: JABRVE010000190.1); JABRVE010000191 (original name was: JABRVE010000191.1); JABRVE010000192 (original name was: JABRVE010000192.1); JABRVE010000194 (original name was: JABRVE010000194.1); JABRVE010000196 (original name was: JABRVE010000196.1); JABRVE010000197 (original name was: JABRVE010000197.1); JABRVE010000199 (original name was: JABRVE010000199.1); JABRVE010000020 (original name was: JABRVE010000020.1); JABRVE010000200 (original name was: JABRVE010000200.1); JABRVE010000201 (original name was: JABRVE010000201.1); JABRVE010000202 (original name was: JABRVE010000202.1); JABRVE010000205 (original name was: JABRVE010000205.1); JABRVE010000206 (original name was: JABRVE010000206.1); JABRVE010000207 (original name was: JABRVE010000207.1); JABRVE010000208 (original name was: JABRVE010000208.1); JABRVE010000209 (original name was: JABRVE010000209.1); JABRVE010000021 (original name was: JABRVE010000021.1); JABRVE010000212 (original name was: JABRVE010000212.1); JABRVE010000213 (original name was: JABRVE010000213.1); JABRVE010000214 (original name was: JABRVE010000214.1); JABRVE010000216 (original name was: JABRVE010000216.1); JABRVE010000219 (original name was: JABRVE010000219.1); JABRVE010000022 (original name was: JABRVE010000022.1); JABRVE010000225 (original name was: JABRVE010000225.1); JABRVE010000023 (original name was: JABRVE010000023.1); JABRVE010000024 (original name was: JABRVE010000024.1); JABRVE010000025 (original name was: JABRVE010000025.1); JABRVE010000026 (original name was: JABRVE010000026.1); JABRVE010000027 (original name was: JABRVE010000027.1); JABRVE010000028 (original name was: JABRVE010000028.1); JABRVE010000029 (original name was: JABRVE010000029.1); JABRVE010000030 (original name was: JABRVE010000030.1); JABRVE010000031 (original name was: JABRVE010000031.1); JABRVE010000032 (original name was: JABRVE010000032.1); JABRVE010000033 (original name was: JABRVE010000033.1); JABRVE010000034 (original name was: JABRVE010000034.1); JABRVE010000036 (original name was: JABRVE010000036.1); JABRVE010000037 (original name was: JABRVE010000037.1); JABRVE010000038 (original name was: JABRVE010000038.1); JABRVE010000039 (original name was: JABRVE010000039.1); JABRVE010000040 (original name was: JABRVE010000040.1); JABRVE010000041 (original name was: JABRVE010000041.1); JABRVE010000042 (original name was: JABRVE010000042.1); JABRVE010000043 (original name was: JABRVE010000043.1); JABRVE010000044 (original name was: JABRVE010000044.1); JABRVE010000045 (original name was: JABRVE010000045.1); JABRVE010000046 (original name was: JABRVE010000046.1); JABRVE010000047 (original name was: JABRVE010000047.1); JABRVE010000048 (original name was: JABRVE010000048.1); JABRVE010000049 (original name was: JABRVE010000049.1); JABRVE010000005 (original name was: JABRVE010000005.1); JABRVE010000050 (original name was: JABRVE010000050.1); JABRVE010000051 (original name was: JABRVE010000051.1); JABRVE010000052 (original name was: JABRVE010000052.1); JABRVE010000054 (original name was: JABRVE010000054.1); JABRVE010000055 (original name was: JABRVE010000055.1); JABRVE010000056 (original name was: JABRVE010000056.1); JABRVE010000057 (original name was: JABRVE010000057.1); JABRVE010000058 (original name was: JABRVE010000058.1); JABRVE010000059 (original name was: JABRVE010000059.1); JABRVE010000006 (original name was: JABRVE010000006.1); JABRVE010000060 (original name was: JABRVE010000060.1); JABRVE010000061 (original name was: JABRVE010000061.1); JABRVE010000063 (original name was: JABRVE010000063.1); JABRVE010000064 (original name was: JABRVE010000064.1); JABRVE010000065 (original name was: JABRVE010000065.1); JABRVE010000066 (original name was: JABRVE010000066.1); JABRVE010000067 (original name was: JABRVE010000067.1); JABRVE010000068 (original name was: JABRVE010000068.1); JABRVE010000069 (original name was: JABRVE010000069.1); JABRVE010000007 (original name was: JABRVE010000007.1); JABRVE010000070 (original name was: JABRVE010000070.1); JABRVE010000071 (original name was: JABRVE010000071.1); JABRVE010000072 (original name was: JABRVE010000072.1); JABRVE010000073 (original name was: JABRVE010000073.1); JABRVE010000074 (original name was: JABRVE010000074.1); JABRVE010000075 (original name was: JABRVE010000075.1); JABRVE010000076 (original name was: JABRVE010000076.1); JABRVE010000077 (original name was: JABRVE010000077.1); JABRVE010000078 (original name was: JABRVE010000078.1); JABRVE010000008 (original name was: JABRVE010000008.1); JABRVE010000080 (original name was: JABRVE010000080.1); JABRVE010000081 (original name was: JABRVE010000081.1); JABRVE010000082 (original name was: JABRVE010000082.1); JABRVE010000083 (original name was: JABRVE010000083.1); JABRVE010000084 (original name was: JABRVE010000084.1); JABRVE010000085 (original name was: JABRVE010000085.1); JABRVE010000086 (original name was: JABRVE010000086.1); JABRVE010000087 (original name was: JABRVE010000087.1); JABRVE010000088 (original name was: JABRVE010000088.1); JABRVE010000009 (original name was: JABRVE010000009.1); JABRVE010000090 (original name was: JABRVE010000090.1); JABRVE010000091 (original name was: JABRVE010000091.1); JABRVE010000092 (original name was: JABRVE010000092.1); JABRVE010000093 (original name was: JABRVE010000093.1); JABRVE010000094 (original name was: JABRVE010000094.1); JABRVE010000095 (original name was: JABRVE010000095.1); JABRVE010000096 (original name was: JABRVE010000096.1); JABRVE010000097 (original name was: JABRVE010000097.1); JABRVE010000098 (original name was: JABRVE010000098.1); JABRVE010000099 (original name was: JABRVE010000099.1)

Compact view

c00019_JABRVE0.. - Region 1 - hydroxybenzoate2phenol

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Location: 1 - 15,181 nt. (total: 15,181 nt) Show pHMM detection rules used

Region on contig edge.

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00087_JABRVE0.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 9,775 nt. (total: 9,775 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00106_JABRVE0.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 1 - 21,084 nt. (total: 21,084 nt) Show pHMM detection rules used

Region on contig edge.

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00131_JABRVE0.. - Region 1 - fatty_acids-unassigned

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Location: 18,631 - 41,867 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00141_JABRVE0.. - Region 1 - Putrescine2spermidine

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Location: 16,491 - 37,321 nt. (total: 20,831 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00156_JABRVE0.. - Region 1 - fatty_acids-unassigned

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Location: 37,230 - 85,440 nt. (total: 48,211 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00166_JABRVE0.. - Region 1 - Fumarate2succinate

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Location: 1 - 11,411 nt. (total: 11,411 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

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c00184_JABRVE0.. - Region 1 - Nitrate_reductase

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Location: 1 - 22,342 nt. (total: 22,342 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00195_JABRVE0.. - Region 1 - TPP_AA_metabolism

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Location: 3,815 - 17,805 nt. (total: 13,991 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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