GCA_013377685.1 - 4 region(s)

Identified primary metabolite regions

JABXWP010000015 (original name was: JABXWP010000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Pyruvate2acetate-formate	SCFA	7,795	31,045	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JABXWP010000001 (original name was: JABXWP010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	TPP_AA_metabolism	Putative	133,582	165,658

JABXWP010000033 (original name was: JABXWP010000033.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	Flavoenzyme_sugar_catabolism	Putative	1	22,206

JABXWP010000007 (original name was: JABXWP010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 70.1	TPP_fatty_acids	Putative	33,215	59,211

No primary metabolite regions were found in these records:: JABXWP010000010 (original name was: JABXWP010000010.1); JABXWP010000011 (original name was: JABXWP010000011.1); JABXWP010000012 (original name was: JABXWP010000012.1); JABXWP010000013 (original name was: JABXWP010000013.1); JABXWP010000014 (original name was: JABXWP010000014.1); JABXWP010000016 (original name was: JABXWP010000016.1); JABXWP010000017 (original name was: JABXWP010000017.1); JABXWP010000018 (original name was: JABXWP010000018.1); JABXWP010000019 (original name was: JABXWP010000019.1); JABXWP010000020 (original name was: JABXWP010000020.1); JABXWP010000021 (original name was: JABXWP010000021.1); JABXWP010000022 (original name was: JABXWP010000022.1); JABXWP010000023 (original name was: JABXWP010000023.1); JABXWP010000024 (original name was: JABXWP010000024.1); JABXWP010000025 (original name was: JABXWP010000025.1); JABXWP010000026 (original name was: JABXWP010000026.1); JABXWP010000027 (original name was: JABXWP010000027.1); JABXWP010000028 (original name was: JABXWP010000028.1); JABXWP010000029 (original name was: JABXWP010000029.1); JABXWP010000002 (original name was: JABXWP010000002.1); JABXWP010000030 (original name was: JABXWP010000030.1); JABXWP010000031 (original name was: JABXWP010000031.1); JABXWP010000032 (original name was: JABXWP010000032.1); JABXWP010000034 (original name was: JABXWP010000034.1); JABXWP010000035 (original name was: JABXWP010000035.1); JABXWP010000036 (original name was: JABXWP010000036.1); JABXWP010000037 (original name was: JABXWP010000037.1); JABXWP010000038 (original name was: JABXWP010000038.1); JABXWP010000039 (original name was: JABXWP010000039.1); JABXWP010000003 (original name was: JABXWP010000003.1); JABXWP010000040 (original name was: JABXWP010000040.1); JABXWP010000041 (original name was: JABXWP010000041.1); JABXWP010000042 (original name was: JABXWP010000042.1); JABXWP010000043 (original name was: JABXWP010000043.1); JABXWP010000044 (original name was: JABXWP010000044.1); JABXWP010000045 (original name was: JABXWP010000045.1); JABXWP010000046 (original name was: JABXWP010000046.1); JABXWP010000047 (original name was: JABXWP010000047.1); JABXWP010000048 (original name was: JABXWP010000048.1); JABXWP010000049 (original name was: JABXWP010000049.1); JABXWP010000004 (original name was: JABXWP010000004.1); JABXWP010000050 (original name was: JABXWP010000050.1); JABXWP010000051 (original name was: JABXWP010000051.1); JABXWP010000052 (original name was: JABXWP010000052.1); JABXWP010000053 (original name was: JABXWP010000053.1); JABXWP010000054 (original name was: JABXWP010000054.1); JABXWP010000055 (original name was: JABXWP010000055.1); JABXWP010000056 (original name was: JABXWP010000056.1); JABXWP010000057 (original name was: JABXWP010000057.1); JABXWP010000058 (original name was: JABXWP010000058.1); JABXWP010000059 (original name was: JABXWP010000059.1); JABXWP010000005 (original name was: JABXWP010000005.1); JABXWP010000060 (original name was: JABXWP010000060.1); JABXWP010000061 (original name was: JABXWP010000061.1); JABXWP010000062 (original name was: JABXWP010000062.1); JABXWP010000063 (original name was: JABXWP010000063.1); JABXWP010000064 (original name was: JABXWP010000064.1); JABXWP010000065 (original name was: JABXWP010000065.1); JABXWP010000066 (original name was: JABXWP010000066.1); JABXWP010000067 (original name was: JABXWP010000067.1); JABXWP010000068 (original name was: JABXWP010000068.1); JABXWP010000069 (original name was: JABXWP010000069.1); JABXWP010000006 (original name was: JABXWP010000006.1); JABXWP010000070 (original name was: JABXWP010000070.1); JABXWP010000071 (original name was: JABXWP010000071.1); JABXWP010000072 (original name was: JABXWP010000072.1); JABXWP010000008 (original name was: JABXWP010000008.1); JABXWP010000009 (original name was: JABXWP010000009.1)

Compact view

c00006_JABXWP0.. - Region 1 - Pyruvate2acetate-formate

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Location: 7,795 - 31,045 nt. (total: 23,251 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00011_JABXWP0.. - Region 1 - TPP_AA_metabolism

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Location: 133,582 - 165,658 nt. (total: 32,077 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00026_JABXWP0.. - Region 1 - Flavoenzyme_sugar_catabolism

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Location: 1 - 22,206 nt. (total: 22,206 nt) Show pHMM detection rules used

Region on contig edge.

Flavoenzyme_sugar_catabolism: ((cds(Pyr_redox_2 and Oxidored_FMN) or baiCD or baiH) and minimum(2, [Alpha-amylase, Glyco_hydro_1, Glyco_hydro_25, Glyco_hydro_36, Glycos_transf_3, PTS_EIIC, Polysacc_deac_1]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00070_JABXWP0.. - Region 1 - TPP_fatty_acids

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Location: 33,215 - 59,211 nt. (total: 25,997 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.