GCA_013425605.1 - 4 region(s)

Identified primary metabolite regions

JACCKN010000022 (original name was: JACCKN010000022.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Pyruvate2acetate-formate	SCFA	11,271	34,521	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JACCKN010000006 (original name was: JACCKN010000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 62.1	TPP_fatty_acids	Putative	39,264	65,261

JACCKN010000007 (original name was: JACCKN010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 71.1	gallic_acid_met	Aromatic	9,721	31,778	Gallic acid degradation B. sp. KLE	GALL	100%

JACCKN010000009 (original name was: JACCKN010000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 74.1	TPP_AA_metabolism	Putative	52,205	84,266

No primary metabolite regions were found in these records:: JACCKN010000010 (original name was: JACCKN010000010.1); JACCKN010000011 (original name was: JACCKN010000011.1); JACCKN010000012 (original name was: JACCKN010000012.1); JACCKN010000013 (original name was: JACCKN010000013.1); JACCKN010000014 (original name was: JACCKN010000014.1); JACCKN010000015 (original name was: JACCKN010000015.1); JACCKN010000016 (original name was: JACCKN010000016.1); JACCKN010000017 (original name was: JACCKN010000017.1); JACCKN010000018 (original name was: JACCKN010000018.1); JACCKN010000019 (original name was: JACCKN010000019.1); JACCKN010000001 (original name was: JACCKN010000001.1); JACCKN010000020 (original name was: JACCKN010000020.1); JACCKN010000021 (original name was: JACCKN010000021.1); JACCKN010000023 (original name was: JACCKN010000023.1); JACCKN010000024 (original name was: JACCKN010000024.1); JACCKN010000025 (original name was: JACCKN010000025.1); JACCKN010000026 (original name was: JACCKN010000026.1); JACCKN010000027 (original name was: JACCKN010000027.1); JACCKN010000028 (original name was: JACCKN010000028.1); JACCKN010000029 (original name was: JACCKN010000029.1); JACCKN010000002 (original name was: JACCKN010000002.1); JACCKN010000030 (original name was: JACCKN010000030.1); JACCKN010000031 (original name was: JACCKN010000031.1); JACCKN010000032 (original name was: JACCKN010000032.1); JACCKN010000033 (original name was: JACCKN010000033.1); JACCKN010000034 (original name was: JACCKN010000034.1); JACCKN010000035 (original name was: JACCKN010000035.1); JACCKN010000036 (original name was: JACCKN010000036.1); JACCKN010000037 (original name was: JACCKN010000037.1); JACCKN010000038 (original name was: JACCKN010000038.1); JACCKN010000039 (original name was: JACCKN010000039.1); JACCKN010000003 (original name was: JACCKN010000003.1); JACCKN010000040 (original name was: JACCKN010000040.1); JACCKN010000041 (original name was: JACCKN010000041.1); JACCKN010000042 (original name was: JACCKN010000042.1); JACCKN010000043 (original name was: JACCKN010000043.1); JACCKN010000044 (original name was: JACCKN010000044.1); JACCKN010000045 (original name was: JACCKN010000045.1); JACCKN010000046 (original name was: JACCKN010000046.1); JACCKN010000047 (original name was: JACCKN010000047.1); JACCKN010000048 (original name was: JACCKN010000048.1); JACCKN010000049 (original name was: JACCKN010000049.1); JACCKN010000004 (original name was: JACCKN010000004.1); JACCKN010000050 (original name was: JACCKN010000050.1); JACCKN010000051 (original name was: JACCKN010000051.1); JACCKN010000052 (original name was: JACCKN010000052.1); JACCKN010000053 (original name was: JACCKN010000053.1); JACCKN010000054 (original name was: JACCKN010000054.1); JACCKN010000055 (original name was: JACCKN010000055.1); JACCKN010000056 (original name was: JACCKN010000056.1); JACCKN010000057 (original name was: JACCKN010000057.1); JACCKN010000058 (original name was: JACCKN010000058.1); JACCKN010000005 (original name was: JACCKN010000005.1); JACCKN010000059 (original name was: JACCKN010000059.1); JACCKN010000060 (original name was: JACCKN010000060.1); JACCKN010000061 (original name was: JACCKN010000061.1); JACCKN010000062 (original name was: JACCKN010000062.1); JACCKN010000063 (original name was: JACCKN010000063.1); JACCKN010000064 (original name was: JACCKN010000064.1); JACCKN010000065 (original name was: JACCKN010000065.1); JACCKN010000066 (original name was: JACCKN010000066.1); JACCKN010000067 (original name was: JACCKN010000067.1); JACCKN010000068 (original name was: JACCKN010000068.1); JACCKN010000069 (original name was: JACCKN010000069.1); JACCKN010000070 (original name was: JACCKN010000070.1); JACCKN010000071 (original name was: JACCKN010000071.1); JACCKN010000072 (original name was: JACCKN010000072.1); JACCKN010000073 (original name was: JACCKN010000073.1); JACCKN010000074 (original name was: JACCKN010000074.1); JACCKN010000008 (original name was: JACCKN010000008.1)

Compact view

c00014_JACCKN0.. - Region 1 - Pyruvate2acetate-formate

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Location: 11,271 - 34,521 nt. (total: 23,251 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00062_JACCKN0.. - Region 1 - TPP_fatty_acids

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Location: 39,264 - 65,261 nt. (total: 25,998 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00071_JACCKN0.. - Region 1 - gallic_acid_met

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Location: 9,721 - 31,778 nt. (total: 22,058 nt) Show pHMM detection rules used

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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c00074_JACCKN0.. - Region 1 - TPP_AA_metabolism

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Location: 52,205 - 84,266 nt. (total: 32,062 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.