GCA_013425615.1 - 4 region(s)

Identified primary metabolite regions

JACCKO010000013 (original name was: JACCKO010000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	TPP_AA_metabolism	Putative	52,207	74,687

JACCKO010000014 (original name was: JACCKO010000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	OD_fatty_acids	Putative	10,021	35,204

JACCKO010000029 (original name was: JACCKO010000029.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	Pyruvate2acetate-formate	SCFA	7,298	28,741	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JACCKO010000030 (original name was: JACCKO010000030.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	gallic_acid_met	Aromatic	1	18,685	Gallic acid degradation B. sp. KLE	GALL	100%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 4.1	TPP_AA_metabolism	Putative	52,207	74,687
Region 5.1	OD_fatty_acids	Putative	10,021	35,204
Region 21.1	Pyruvate2acetate-formate	SCFA	7,298	28,741	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 23.1	gallic_acid_met	Aromatic	1	18,685	Gallic acid degradation B. sp. KLE	GALL	100%

No primary metabolite regions were found in these records:: JACCKO010000010 (original name was: JACCKO010000010.1); JACCKO010000011 (original name was: JACCKO010000011.1); JACCKO010000012 (original name was: JACCKO010000012.1); JACCKO010000015 (original name was: JACCKO010000015.1); JACCKO010000016 (original name was: JACCKO010000016.1); JACCKO010000017 (original name was: JACCKO010000017.1); JACCKO010000018 (original name was: JACCKO010000018.1); JACCKO010000019 (original name was: JACCKO010000019.1); JACCKO010000001 (original name was: JACCKO010000001.1); JACCKO010000020 (original name was: JACCKO010000020.1); JACCKO010000021 (original name was: JACCKO010000021.1); JACCKO010000022 (original name was: JACCKO010000022.1); JACCKO010000023 (original name was: JACCKO010000023.1); JACCKO010000024 (original name was: JACCKO010000024.1); JACCKO010000025 (original name was: JACCKO010000025.1); JACCKO010000026 (original name was: JACCKO010000026.1); JACCKO010000027 (original name was: JACCKO010000027.1); JACCKO010000028 (original name was: JACCKO010000028.1); JACCKO010000002 (original name was: JACCKO010000002.1); JACCKO010000031 (original name was: JACCKO010000031.1); JACCKO010000032 (original name was: JACCKO010000032.1); JACCKO010000033 (original name was: JACCKO010000033.1); JACCKO010000034 (original name was: JACCKO010000034.1); JACCKO010000035 (original name was: JACCKO010000035.1); JACCKO010000036 (original name was: JACCKO010000036.1); JACCKO010000037 (original name was: JACCKO010000037.1); JACCKO010000038 (original name was: JACCKO010000038.1); JACCKO010000039 (original name was: JACCKO010000039.1); JACCKO010000003 (original name was: JACCKO010000003.1); JACCKO010000040 (original name was: JACCKO010000040.1); JACCKO010000041 (original name was: JACCKO010000041.1); JACCKO010000042 (original name was: JACCKO010000042.1); JACCKO010000043 (original name was: JACCKO010000043.1); JACCKO010000044 (original name was: JACCKO010000044.1); JACCKO010000045 (original name was: JACCKO010000045.1); JACCKO010000046 (original name was: JACCKO010000046.1); JACCKO010000047 (original name was: JACCKO010000047.1); JACCKO010000048 (original name was: JACCKO010000048.1); JACCKO010000049 (original name was: JACCKO010000049.1); JACCKO010000004 (original name was: JACCKO010000004.1); JACCKO010000050 (original name was: JACCKO010000050.1); JACCKO010000051 (original name was: JACCKO010000051.1); JACCKO010000052 (original name was: JACCKO010000052.1); JACCKO010000053 (original name was: JACCKO010000053.1); JACCKO010000054 (original name was: JACCKO010000054.1); JACCKO010000055 (original name was: JACCKO010000055.1); JACCKO010000056 (original name was: JACCKO010000056.1); JACCKO010000057 (original name was: JACCKO010000057.1); JACCKO010000058 (original name was: JACCKO010000058.1); JACCKO010000059 (original name was: JACCKO010000059.1); JACCKO010000005 (original name was: JACCKO010000005.1); JACCKO010000060 (original name was: JACCKO010000060.1); JACCKO010000061 (original name was: JACCKO010000061.1); JACCKO010000062 (original name was: JACCKO010000062.1); JACCKO010000063 (original name was: JACCKO010000063.1); JACCKO010000064 (original name was: JACCKO010000064.1); JACCKO010000065 (original name was: JACCKO010000065.1); JACCKO010000066 (original name was: JACCKO010000066.1); JACCKO010000067 (original name was: JACCKO010000067.1); JACCKO010000068 (original name was: JACCKO010000068.1); JACCKO010000069 (original name was: JACCKO010000069.1); JACCKO010000006 (original name was: JACCKO010000006.1); JACCKO010000070 (original name was: JACCKO010000070.1); JACCKO010000071 (original name was: JACCKO010000071.1); JACCKO010000072 (original name was: JACCKO010000072.1); JACCKO010000073 (original name was: JACCKO010000073.1); JACCKO010000074 (original name was: JACCKO010000074.1); JACCKO010000075 (original name was: JACCKO010000075.1); JACCKO010000076 (original name was: JACCKO010000076.1); JACCKO010000077 (original name was: JACCKO010000077.1); JACCKO010000078 (original name was: JACCKO010000078.1); JACCKO010000079 (original name was: JACCKO010000079.1); JACCKO010000007 (original name was: JACCKO010000007.1); JACCKO010000080 (original name was: JACCKO010000080.1); JACCKO010000081 (original name was: JACCKO010000081.1); JACCKO010000082 (original name was: JACCKO010000082.1); JACCKO010000083 (original name was: JACCKO010000083.1); JACCKO010000008 (original name was: JACCKO010000008.1); JACCKO010000009 (original name was: JACCKO010000009.1)

Compact view

c00004_JACCKO0.. - Region 1 - TPP_AA_metabolism

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Location: 52,207 - 74,687 nt. (total: 22,481 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00005_JACCKO0.. - Region 1 - OD_fatty_acids

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Location: 10,021 - 35,204 nt. (total: 25,184 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00021_JACCKO0.. - Region 1 - Pyruvate2acetate-formate

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Location: 7,298 - 28,741 nt. (total: 21,444 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00023_JACCKO0.. - Region 1 - gallic_acid_met

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Location: 1 - 18,685 nt. (total: 18,685 nt) Show pHMM detection rules used

Region on contig edge.

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters