GCA_013425655.1 - 4 region(s)

Identified primary metabolite regions

JACCKL010000020 (original name was: JACCKL010000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Pyruvate2acetate-formate	SCFA	11,150	34,400	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JACCKL010000002 (original name was: JACCKL010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_fatty_acids	Putative	39,263	65,259

JACCKL010000005 (original name was: JACCKL010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	TPP_AA_metabolism	Putative	89,805	121,865

JACCKL010000007 (original name was: JACCKL010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 64.1	gallic_acid_met	Aromatic	9,721	31,778	Gallic acid degradation B. sp. KLE	GALL	100%

No primary metabolite regions were found in these records:: JACCKL010000010 (original name was: JACCKL010000010.1); JACCKL010000011 (original name was: JACCKL010000011.1); JACCKL010000012 (original name was: JACCKL010000012.1); JACCKL010000013 (original name was: JACCKL010000013.1); JACCKL010000014 (original name was: JACCKL010000014.1); JACCKL010000015 (original name was: JACCKL010000015.1); JACCKL010000016 (original name was: JACCKL010000016.1); JACCKL010000017 (original name was: JACCKL010000017.1); JACCKL010000018 (original name was: JACCKL010000018.1); JACCKL010000019 (original name was: JACCKL010000019.1); JACCKL010000001 (original name was: JACCKL010000001.1); JACCKL010000021 (original name was: JACCKL010000021.1); JACCKL010000022 (original name was: JACCKL010000022.1); JACCKL010000023 (original name was: JACCKL010000023.1); JACCKL010000024 (original name was: JACCKL010000024.1); JACCKL010000025 (original name was: JACCKL010000025.1); JACCKL010000026 (original name was: JACCKL010000026.1); JACCKL010000027 (original name was: JACCKL010000027.1); JACCKL010000028 (original name was: JACCKL010000028.1); JACCKL010000029 (original name was: JACCKL010000029.1); JACCKL010000030 (original name was: JACCKL010000030.1); JACCKL010000031 (original name was: JACCKL010000031.1); JACCKL010000032 (original name was: JACCKL010000032.1); JACCKL010000033 (original name was: JACCKL010000033.1); JACCKL010000034 (original name was: JACCKL010000034.1); JACCKL010000035 (original name was: JACCKL010000035.1); JACCKL010000036 (original name was: JACCKL010000036.1); JACCKL010000037 (original name was: JACCKL010000037.1); JACCKL010000038 (original name was: JACCKL010000038.1); JACCKL010000039 (original name was: JACCKL010000039.1); JACCKL010000003 (original name was: JACCKL010000003.1); JACCKL010000040 (original name was: JACCKL010000040.1); JACCKL010000041 (original name was: JACCKL010000041.1); JACCKL010000042 (original name was: JACCKL010000042.1); JACCKL010000043 (original name was: JACCKL010000043.1); JACCKL010000044 (original name was: JACCKL010000044.1); JACCKL010000045 (original name was: JACCKL010000045.1); JACCKL010000046 (original name was: JACCKL010000046.1); JACCKL010000047 (original name was: JACCKL010000047.1); JACCKL010000048 (original name was: JACCKL010000048.1); JACCKL010000049 (original name was: JACCKL010000049.1); JACCKL010000004 (original name was: JACCKL010000004.1); JACCKL010000050 (original name was: JACCKL010000050.1); JACCKL010000051 (original name was: JACCKL010000051.1); JACCKL010000052 (original name was: JACCKL010000052.1); JACCKL010000053 (original name was: JACCKL010000053.1); JACCKL010000054 (original name was: JACCKL010000054.1); JACCKL010000055 (original name was: JACCKL010000055.1); JACCKL010000056 (original name was: JACCKL010000056.1); JACCKL010000057 (original name was: JACCKL010000057.1); JACCKL010000058 (original name was: JACCKL010000058.1); JACCKL010000059 (original name was: JACCKL010000059.1); JACCKL010000060 (original name was: JACCKL010000060.1); JACCKL010000061 (original name was: JACCKL010000061.1); JACCKL010000062 (original name was: JACCKL010000062.1); JACCKL010000063 (original name was: JACCKL010000063.1); JACCKL010000064 (original name was: JACCKL010000064.1); JACCKL010000065 (original name was: JACCKL010000065.1); JACCKL010000066 (original name was: JACCKL010000066.1); JACCKL010000006 (original name was: JACCKL010000006.1); JACCKL010000008 (original name was: JACCKL010000008.1); JACCKL010000009 (original name was: JACCKL010000009.1)

Compact view

c00012_JACCKL0.. - Region 1 - Pyruvate2acetate-formate

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Location: 11,150 - 34,400 nt. (total: 23,251 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00022_JACCKL0.. - Region 1 - TPP_fatty_acids

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Location: 39,263 - 65,259 nt. (total: 25,997 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

additional biosynthetic genes

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regulatory genes

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electron transport genes

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Gene details

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KnownClusterBlast

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No matches found.

c00055_JACCKL0.. - Region 1 - TPP_AA_metabolism

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Location: 89,805 - 121,865 nt. (total: 32,061 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00064_JACCKL0.. - Region 1 - gallic_acid_met

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Location: 9,721 - 31,778 nt. (total: 22,058 nt) Show pHMM detection rules used

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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Gene details

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KnownClusterBlast

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