GCA_013425665.1 - 4 region(s)

Identified primary metabolite regions

JACCKK010000024 (original name was: JACCKK010000024.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Pyruvate2acetate-formate	SCFA	1	21,413	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JACCKK010000030 (original name was: JACCKK010000030.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	gallic_acid_met	Aromatic	1	18,686	Gallic acid degradation B. sp. KLE	GALL	100%

JACCKK010000005 (original name was: JACCKK010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	TPP_AA_metabolism	Putative	88,245	120,304

JACCKK010000008 (original name was: JACCKK010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 79.1	TPP_fatty_acids	Putative	27,640	53,637

No primary metabolite regions were found in these records:: JACCKK010000010 (original name was: JACCKK010000010.1); JACCKK010000011 (original name was: JACCKK010000011.1); JACCKK010000012 (original name was: JACCKK010000012.1); JACCKK010000013 (original name was: JACCKK010000013.1); JACCKK010000014 (original name was: JACCKK010000014.1); JACCKK010000015 (original name was: JACCKK010000015.1); JACCKK010000016 (original name was: JACCKK010000016.1); JACCKK010000017 (original name was: JACCKK010000017.1); JACCKK010000018 (original name was: JACCKK010000018.1); JACCKK010000019 (original name was: JACCKK010000019.1); JACCKK010000001 (original name was: JACCKK010000001.1); JACCKK010000020 (original name was: JACCKK010000020.1); JACCKK010000021 (original name was: JACCKK010000021.1); JACCKK010000022 (original name was: JACCKK010000022.1); JACCKK010000023 (original name was: JACCKK010000023.1); JACCKK010000025 (original name was: JACCKK010000025.1); JACCKK010000026 (original name was: JACCKK010000026.1); JACCKK010000027 (original name was: JACCKK010000027.1); JACCKK010000028 (original name was: JACCKK010000028.1); JACCKK010000029 (original name was: JACCKK010000029.1); JACCKK010000002 (original name was: JACCKK010000002.1); JACCKK010000031 (original name was: JACCKK010000031.1); JACCKK010000032 (original name was: JACCKK010000032.1); JACCKK010000033 (original name was: JACCKK010000033.1); JACCKK010000034 (original name was: JACCKK010000034.1); JACCKK010000035 (original name was: JACCKK010000035.1); JACCKK010000036 (original name was: JACCKK010000036.1); JACCKK010000037 (original name was: JACCKK010000037.1); JACCKK010000038 (original name was: JACCKK010000038.1); JACCKK010000039 (original name was: JACCKK010000039.1); JACCKK010000003 (original name was: JACCKK010000003.1); JACCKK010000040 (original name was: JACCKK010000040.1); JACCKK010000041 (original name was: JACCKK010000041.1); JACCKK010000042 (original name was: JACCKK010000042.1); JACCKK010000043 (original name was: JACCKK010000043.1); JACCKK010000044 (original name was: JACCKK010000044.1); JACCKK010000045 (original name was: JACCKK010000045.1); JACCKK010000046 (original name was: JACCKK010000046.1); JACCKK010000047 (original name was: JACCKK010000047.1); JACCKK010000048 (original name was: JACCKK010000048.1); JACCKK010000049 (original name was: JACCKK010000049.1); JACCKK010000004 (original name was: JACCKK010000004.1); JACCKK010000050 (original name was: JACCKK010000050.1); JACCKK010000051 (original name was: JACCKK010000051.1); JACCKK010000052 (original name was: JACCKK010000052.1); JACCKK010000053 (original name was: JACCKK010000053.1); JACCKK010000054 (original name was: JACCKK010000054.1); JACCKK010000055 (original name was: JACCKK010000055.1); JACCKK010000056 (original name was: JACCKK010000056.1); JACCKK010000057 (original name was: JACCKK010000057.1); JACCKK010000058 (original name was: JACCKK010000058.1); JACCKK010000059 (original name was: JACCKK010000059.1); JACCKK010000060 (original name was: JACCKK010000060.1); JACCKK010000061 (original name was: JACCKK010000061.1); JACCKK010000062 (original name was: JACCKK010000062.1); JACCKK010000063 (original name was: JACCKK010000063.1); JACCKK010000064 (original name was: JACCKK010000064.1); JACCKK010000065 (original name was: JACCKK010000065.1); JACCKK010000066 (original name was: JACCKK010000066.1); JACCKK010000067 (original name was: JACCKK010000067.1); JACCKK010000068 (original name was: JACCKK010000068.1); JACCKK010000069 (original name was: JACCKK010000069.1); JACCKK010000006 (original name was: JACCKK010000006.1); JACCKK010000070 (original name was: JACCKK010000070.1); JACCKK010000071 (original name was: JACCKK010000071.1); JACCKK010000072 (original name was: JACCKK010000072.1); JACCKK010000073 (original name was: JACCKK010000073.1); JACCKK010000074 (original name was: JACCKK010000074.1); JACCKK010000075 (original name was: JACCKK010000075.1); JACCKK010000076 (original name was: JACCKK010000076.1); JACCKK010000077 (original name was: JACCKK010000077.1); JACCKK010000078 (original name was: JACCKK010000078.1); JACCKK010000079 (original name was: JACCKK010000079.1); JACCKK010000007 (original name was: JACCKK010000007.1); JACCKK010000080 (original name was: JACCKK010000080.1); JACCKK010000009 (original name was: JACCKK010000009.1)

Compact view

c00016_JACCKK0.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 21,413 nt. (total: 21,413 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00023_JACCKK0.. - Region 1 - gallic_acid_met

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Location: 1 - 18,686 nt. (total: 18,686 nt) Show pHMM detection rules used

Region on contig edge.

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00055_JACCKK0.. - Region 1 - TPP_AA_metabolism

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Location: 88,245 - 120,304 nt. (total: 32,060 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00079_JACCKK0.. - Region 1 - TPP_fatty_acids

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Location: 27,640 - 53,637 nt. (total: 25,998 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.