GCA_013867595.1 - 3 region(s)

Identified primary metabolite regions

JACEIM010000013 (original name was: JACEIM010000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	TPP_AA_metabolism	Putative	23,546	55,681

JACEIM010000001 (original name was: JACEIM010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	TPP_fatty_acids	Putative	52,083	77,784

JACEIM010000005 (original name was: JACEIM010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	Pyruvate2acetate-formate	SCFA	86,152	101,806	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 4.1	TPP_AA_metabolism	Putative	23,546	55,681
Region 11.1	TPP_fatty_acids	Putative	52,083	77,784
Region 55.1	Pyruvate2acetate-formate	SCFA	86,152	101,806	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: JACEIM010000010 (original name was: JACEIM010000010.1); JACEIM010000011 (original name was: JACEIM010000011.1); JACEIM010000012 (original name was: JACEIM010000012.1); JACEIM010000014 (original name was: JACEIM010000014.1); JACEIM010000015 (original name was: JACEIM010000015.1); JACEIM010000016 (original name was: JACEIM010000016.1); JACEIM010000017 (original name was: JACEIM010000017.1); JACEIM010000018 (original name was: JACEIM010000018.1); JACEIM010000019 (original name was: JACEIM010000019.1); JACEIM010000020 (original name was: JACEIM010000020.1); JACEIM010000021 (original name was: JACEIM010000021.1); JACEIM010000022 (original name was: JACEIM010000022.1); JACEIM010000023 (original name was: JACEIM010000023.1); JACEIM010000024 (original name was: JACEIM010000024.1); JACEIM010000025 (original name was: JACEIM010000025.1); JACEIM010000026 (original name was: JACEIM010000026.1); JACEIM010000027 (original name was: JACEIM010000027.1); JACEIM010000028 (original name was: JACEIM010000028.1); JACEIM010000029 (original name was: JACEIM010000029.1); JACEIM010000002 (original name was: JACEIM010000002.1); JACEIM010000030 (original name was: JACEIM010000030.1); JACEIM010000031 (original name was: JACEIM010000031.1); JACEIM010000032 (original name was: JACEIM010000032.1); JACEIM010000033 (original name was: JACEIM010000033.1); JACEIM010000034 (original name was: JACEIM010000034.1); JACEIM010000035 (original name was: JACEIM010000035.1); JACEIM010000036 (original name was: JACEIM010000036.1); JACEIM010000037 (original name was: JACEIM010000037.1); JACEIM010000038 (original name was: JACEIM010000038.1); JACEIM010000039 (original name was: JACEIM010000039.1); JACEIM010000003 (original name was: JACEIM010000003.1); JACEIM010000040 (original name was: JACEIM010000040.1); JACEIM010000041 (original name was: JACEIM010000041.1); JACEIM010000042 (original name was: JACEIM010000042.1); JACEIM010000043 (original name was: JACEIM010000043.1); JACEIM010000044 (original name was: JACEIM010000044.1); JACEIM010000045 (original name was: JACEIM010000045.1); JACEIM010000046 (original name was: JACEIM010000046.1); JACEIM010000047 (original name was: JACEIM010000047.1); JACEIM010000048 (original name was: JACEIM010000048.1); JACEIM010000049 (original name was: JACEIM010000049.1); JACEIM010000004 (original name was: JACEIM010000004.1); JACEIM010000050 (original name was: JACEIM010000050.1); JACEIM010000051 (original name was: JACEIM010000051.1); JACEIM010000052 (original name was: JACEIM010000052.1); JACEIM010000053 (original name was: JACEIM010000053.1); JACEIM010000054 (original name was: JACEIM010000054.1); JACEIM010000055 (original name was: JACEIM010000055.1); JACEIM010000056 (original name was: JACEIM010000056.1); JACEIM010000057 (original name was: JACEIM010000057.1); JACEIM010000058 (original name was: JACEIM010000058.1); JACEIM010000059 (original name was: JACEIM010000059.1); JACEIM010000060 (original name was: JACEIM010000060.1); JACEIM010000061 (original name was: JACEIM010000061.1); JACEIM010000062 (original name was: JACEIM010000062.1); JACEIM010000063 (original name was: JACEIM010000063.1); JACEIM010000064 (original name was: JACEIM010000064.1); JACEIM010000065 (original name was: JACEIM010000065.1); JACEIM010000066 (original name was: JACEIM010000066.1); JACEIM010000067 (original name was: JACEIM010000067.1); JACEIM010000068 (original name was: JACEIM010000068.1); JACEIM010000069 (original name was: JACEIM010000069.1); JACEIM010000006 (original name was: JACEIM010000006.1); JACEIM010000070 (original name was: JACEIM010000070.1); JACEIM010000071 (original name was: JACEIM010000071.1); JACEIM010000072 (original name was: JACEIM010000072.1); JACEIM010000073 (original name was: JACEIM010000073.1); JACEIM010000074 (original name was: JACEIM010000074.1); JACEIM010000075 (original name was: JACEIM010000075.1); JACEIM010000076 (original name was: JACEIM010000076.1); JACEIM010000077 (original name was: JACEIM010000077.1); JACEIM010000078 (original name was: JACEIM010000078.1); JACEIM010000079 (original name was: JACEIM010000079.1); JACEIM010000007 (original name was: JACEIM010000007.1); JACEIM010000080 (original name was: JACEIM010000080.1); JACEIM010000081 (original name was: JACEIM010000081.1); JACEIM010000082 (original name was: JACEIM010000082.1); JACEIM010000083 (original name was: JACEIM010000083.1); JACEIM010000084 (original name was: JACEIM010000084.1); JACEIM010000085 (original name was: JACEIM010000085.1); JACEIM010000086 (original name was: JACEIM010000086.1); JACEIM010000087 (original name was: JACEIM010000087.1); JACEIM010000088 (original name was: JACEIM010000088.1); JACEIM010000089 (original name was: JACEIM010000089.1); JACEIM010000008 (original name was: JACEIM010000008.1); JACEIM010000090 (original name was: JACEIM010000090.1); JACEIM010000091 (original name was: JACEIM010000091.1); JACEIM010000092 (original name was: JACEIM010000092.1); JACEIM010000093 (original name was: JACEIM010000093.1); JACEIM010000094 (original name was: JACEIM010000094.1); JACEIM010000095 (original name was: JACEIM010000095.1); JACEIM010000096 (original name was: JACEIM010000096.1); JACEIM010000097 (original name was: JACEIM010000097.1); JACEIM010000098 (original name was: JACEIM010000098.1); JACEIM010000009 (original name was: JACEIM010000009.1)

Compact view

c00004_JACEIM0.. - Region 1 - TPP_AA_metabolism

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Location: 23,546 - 55,681 nt. (total: 32,136 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00011_JACEIM0.. - Region 1 - TPP_fatty_acids

Download region GenBank file

Location: 52,083 - 77,784 nt. (total: 25,702 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00055_JACEIM0.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 86,152 - 101,806 nt. (total: 15,655 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters