GCA_014145445.1 - 3 region(s)

Identified primary metabolite regions

JACIUX010000198 (original name was: JACIUX010000198.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_AA_metabolism	Putative	17,348	54,572

JACIUX010000199 (original name was: JACIUX010000199.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	pdu	SCFA-other	60,560	99,062	Propanediol degradation S. enterica	PDU	66%

JACIUX010000202 (original name was: JACIUX010000202.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	Nitrate_reductase	E-MGC	15,230	41,697	Nitrate reductase E. coli	NIR	40%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 22.1	TPP_AA_metabolism	Putative	17,348	54,572
Region 23.1	pdu	SCFA-other	60,560	99,062	Propanediol degradation S. enterica	PDU	66%
Region 26.1	Nitrate_reductase	E-MGC	15,230	41,697	Nitrate reductase E. coli	NIR	40%

No primary metabolite regions were found in these records:: JACIUX010000108 (original name was: JACIUX010000108.1); JACIUX010000110 (original name was: JACIUX010000110.1); JACIUX010000012 (original name was: JACIUX010000012.1); JACIUX010000120 (original name was: JACIUX010000120.1); JACIUX010000129 (original name was: JACIUX010000129.1); JACIUX010000013 (original name was: JACIUX010000013.1); JACIUX010000130 (original name was: JACIUX010000130.1); JACIUX010000131 (original name was: JACIUX010000131.1); JACIUX010000014 (original name was: JACIUX010000014.1); JACIUX010000141 (original name was: JACIUX010000141.1); JACIUX010000015 (original name was: JACIUX010000015.1); JACIUX010000153 (original name was: JACIUX010000153.1); JACIUX010000156 (original name was: JACIUX010000156.1); JACIUX010000157 (original name was: JACIUX010000157.1); JACIUX010000158 (original name was: JACIUX010000158.1); JACIUX010000167 (original name was: JACIUX010000167.1); JACIUX010000174 (original name was: JACIUX010000174.1); JACIUX010000194 (original name was: JACIUX010000194.1); JACIUX010000195 (original name was: JACIUX010000195.1); JACIUX010000196 (original name was: JACIUX010000196.1); JACIUX010000197 (original name was: JACIUX010000197.1); JACIUX010000200 (original name was: JACIUX010000200.1); JACIUX010000201 (original name was: JACIUX010000201.1); JACIUX010000203 (original name was: JACIUX010000203.1); JACIUX010000204 (original name was: JACIUX010000204.1); JACIUX010000205 (original name was: JACIUX010000205.1); JACIUX010000206 (original name was: JACIUX010000206.1); JACIUX010000207 (original name was: JACIUX010000207.1); JACIUX010000208 (original name was: JACIUX010000208.1); JACIUX010000209 (original name was: JACIUX010000209.1); JACIUX010000210 (original name was: JACIUX010000210.1); JACIUX010000211 (original name was: JACIUX010000211.1); JACIUX010000212 (original name was: JACIUX010000212.1); JACIUX010000213 (original name was: JACIUX010000213.1); JACIUX010000214 (original name was: JACIUX010000214.1); JACIUX010000215 (original name was: JACIUX010000215.1); JACIUX010000216 (original name was: JACIUX010000216.1); JACIUX010000217 (original name was: JACIUX010000217.1); JACIUX010000218 (original name was: JACIUX010000218.1); JACIUX010000219 (original name was: JACIUX010000219.1); JACIUX010000220 (original name was: JACIUX010000220.1); JACIUX010000221 (original name was: JACIUX010000221.1); JACIUX010000222 (original name was: JACIUX010000222.1); JACIUX010000223 (original name was: JACIUX010000223.1); JACIUX010000224 (original name was: JACIUX010000224.1); JACIUX010000225 (original name was: JACIUX010000225.1); JACIUX010000226 (original name was: JACIUX010000226.1); JACIUX010000227 (original name was: JACIUX010000227.1); JACIUX010000228 (original name was: JACIUX010000228.1); JACIUX010000229 (original name was: JACIUX010000229.1); JACIUX010000230 (original name was: JACIUX010000230.1); JACIUX010000231 (original name was: JACIUX010000231.1); JACIUX010000232 (original name was: JACIUX010000232.1); JACIUX010000233 (original name was: JACIUX010000233.1); JACIUX010000234 (original name was: JACIUX010000234.1); JACIUX010000235 (original name was: JACIUX010000235.1); JACIUX010000044 (original name was: JACIUX010000044.1); JACIUX010000063 (original name was: JACIUX010000063.1); JACIUX010000074 (original name was: JACIUX010000074.1); JACIUX010000080 (original name was: JACIUX010000080.1); JACIUX010000081 (original name was: JACIUX010000081.1); JACIUX010000091 (original name was: JACIUX010000091.1); JACIUX010000092 (original name was: JACIUX010000092.1); JACIUX010000098 (original name was: JACIUX010000098.1)

Compact view

c00022_JACIUX0.. - Region 1 - TPP_AA_metabolism

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Location: 17,348 - 54,572 nt. (total: 37,225 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00023_JACIUX0.. - Region 1 - pdu

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Location: 60,560 - 99,062 nt. (total: 38,503 nt) Show pHMM detection rules used

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00026_JACIUX0.. - Region 1 - Nitrate_reductase

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Location: 15,230 - 41,697 nt. (total: 26,468 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters