GCA_014840205.2 - 10 region(s)

Identified primary metabolite regions

JACYOV020000001 (original name was: JACYOV020000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	fatty_acids-unassigned	Putative	166,484	216,433

JACYOV020000014 (original name was: JACYOV020000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Fumarate2succinate	SCFA	1	19,124	Acetate to butyrate C. sporogenes	BUT	33%

JACYOV020000020 (original name was: JACYOV020000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	fatty_acids-unassigned	Putative	1	52,302

JACYOV020000022 (original name was: JACYOV020000022.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	histidine2glutamate_hutHGIU_operon	Other	4,169	29,581	Histidine to glutamate K. pneumoniae	GLU	60%

JACYOV020000023 (original name was: JACYOV020000023.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	fatty_acids-unassigned	Putative	5,234	28,449	Acetate to butyrate C. sporogenes	BUT	50%

JACYOV020000027 (original name was: JACYOV020000027.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	TPP_AA_metabolism	Putative	17,938	41,214

JACYOV020000003 (original name was: JACYOV020000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Putrescine2spermidine,Nitrate_reductase	E-MGC	153,955	195,653	Nitrate reductase E. coli	NIR	60%

JACYOV020000033 (original name was: JACYOV020000033.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	hydroxybenzoate2phenol	Aromatic	5,826	18,601	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

JACYOV020000004 (original name was: JACYOV020000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	fatty_acids-unassigned	Putative	30,227	55,585	Acetate to butyrate C. sporogenes	BUT	33%

JACYOV020000009 (original name was: JACYOV020000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 60.1	fatty_acids-unassigned	Putative	1	38,936

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	fatty_acids-unassigned	Putative	166,484	216,433
Region 6.1	Fumarate2succinate	SCFA	1	19,124	Acetate to butyrate C. sporogenes	BUT	33%
Region 13.1	fatty_acids-unassigned	Putative	1	52,302
Region 15.1	histidine2glutamate_hutHGIU_operon	Other	4,169	29,581	Histidine to glutamate K. pneumoniae	GLU	60%
Region 16.1	fatty_acids-unassigned	Putative	5,234	28,449	Acetate to butyrate C. sporogenes	BUT	50%
Region 20.1	TPP_AA_metabolism	Putative	17,938	41,214
Region 23.1	Putrescine2spermidine,Nitrate_reductase	E-MGC	153,955	195,653	Nitrate reductase E. coli	NIR	60%
Region 27.1	hydroxybenzoate2phenol	Aromatic	5,826	18,601	hydroxybenzoate2phenol K. pneumoniae	PHE	100%
Region 34.1	fatty_acids-unassigned	Putative	30,227	55,585	Acetate to butyrate C. sporogenes	BUT	33%
Region 60.1	fatty_acids-unassigned	Putative	1	38,936

No primary metabolite regions were found in these records:: JACYOV020000010 (original name was: JACYOV020000010.1); JACYOV020000011 (original name was: JACYOV020000011.1); JACYOV020000012 (original name was: JACYOV020000012.1); JACYOV020000013 (original name was: JACYOV020000013.1); JACYOV020000015 (original name was: JACYOV020000015.1); JACYOV020000016 (original name was: JACYOV020000016.1); JACYOV020000017 (original name was: JACYOV020000017.1); JACYOV020000018 (original name was: JACYOV020000018.1); JACYOV020000019 (original name was: JACYOV020000019.1); JACYOV020000002 (original name was: JACYOV020000002.1); JACYOV020000021 (original name was: JACYOV020000021.1); JACYOV020000024 (original name was: JACYOV020000024.1); JACYOV020000025 (original name was: JACYOV020000025.1); JACYOV020000026 (original name was: JACYOV020000026.1); JACYOV020000028 (original name was: JACYOV020000028.1); JACYOV020000029 (original name was: JACYOV020000029.1); JACYOV020000030 (original name was: JACYOV020000030.1); JACYOV020000031 (original name was: JACYOV020000031.1); JACYOV020000032 (original name was: JACYOV020000032.1); JACYOV020000034 (original name was: JACYOV020000034.1); JACYOV020000035 (original name was: JACYOV020000035.1); JACYOV020000036 (original name was: JACYOV020000036.1); JACYOV020000037 (original name was: JACYOV020000037.1); JACYOV020000038 (original name was: JACYOV020000038.1); JACYOV020000039 (original name was: JACYOV020000039.1); JACYOV020000040 (original name was: JACYOV020000040.1); JACYOV020000041 (original name was: JACYOV020000041.1); JACYOV020000042 (original name was: JACYOV020000042.1); JACYOV020000043 (original name was: JACYOV020000043.1); JACYOV020000044 (original name was: JACYOV020000044.1); JACYOV020000045 (original name was: JACYOV020000045.1); JACYOV020000046 (original name was: JACYOV020000046.1); JACYOV020000047 (original name was: JACYOV020000047.1); JACYOV020000048 (original name was: JACYOV020000048.1); JACYOV020000049 (original name was: JACYOV020000049.1); JACYOV020000005 (original name was: JACYOV020000005.1); JACYOV020000050 (original name was: JACYOV020000050.1); JACYOV020000051 (original name was: JACYOV020000051.1); JACYOV020000052 (original name was: JACYOV020000052.1); JACYOV020000053 (original name was: JACYOV020000053.1); JACYOV020000054 (original name was: JACYOV020000054.1); JACYOV020000055 (original name was: JACYOV020000055.1); JACYOV020000056 (original name was: JACYOV020000056.1); JACYOV020000057 (original name was: JACYOV020000057.1); JACYOV020000058 (original name was: JACYOV020000058.1); JACYOV020000059 (original name was: JACYOV020000059.1); JACYOV020000006 (original name was: JACYOV020000006.1); JACYOV020000060 (original name was: JACYOV020000060.1); JACYOV020000007 (original name was: JACYOV020000007.1); JACYOV020000008 (original name was: JACYOV020000008.1)

Compact view

c00001_JACYOV0.. - Region 1 - fatty_acids-unassigned

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Location: 166,484 - 216,433 nt. (total: 49,950 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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No matches found.

c00006_JACYOV0.. - Region 1 - Fumarate2succinate

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Location: 1 - 19,124 nt. (total: 19,124 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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c00013_JACYOV0.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 52,302 nt. (total: 52,302 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00015_JACYOV0.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 4,169 - 29,581 nt. (total: 25,413 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00016_JACYOV0.. - Region 1 - fatty_acids-unassigned

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Location: 5,234 - 28,449 nt. (total: 23,216 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00020_JACYOV0.. - Region 1 - TPP_AA_metabolism

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Location: 17,938 - 41,214 nt. (total: 23,277 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00023_JACYOV0.. - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 153,955 - 195,653 nt. (total: 41,699 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00027_JACYOV0.. - Region 1 - hydroxybenzoate2phenol

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Location: 5,826 - 18,601 nt. (total: 12,776 nt) Show pHMM detection rules used

Region on contig edge.

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

Legend:

core biosynthetic genes

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resistance genes

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c00034_JACYOV0.. - Region 1 - fatty_acids-unassigned

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Location: 30,227 - 55,585 nt. (total: 25,359 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00060_JACYOV0.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 38,936 nt. (total: 38,936 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.