GCA_014849155.1 - 5 region(s)

Identified primary metabolite regions

RJZU01000034.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 84.1	Pyruvate2acetate-formate	SCFA	179	23,626	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

RJZU01000042.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 85.1	Others_HGD_unassigned	Putative	46,759	71,783

RJZU01000125.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 121.1	Others_HGD_unassigned	Putative	3,333	28,357

RJZU01000096.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 137.1	Others_HGD_unassigned	Putative	1	13,445

RJZU01000171.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 143.1	Pyruvate2acetate-formate	SCFA	1,577	22,223	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: RJZU01000157.1; RJZU01000010.1; RJZU01000070.1; RJZU01000163.1; RJZU01000167.1; RJZU01000088.1; RJZU01000013.1; RJZU01000037.1; RJZU01000105.1; RJZU01000005.1; RJZU01000008.1; RJZU01000053.1; RJZU01000055.1; RJZU01000015.1; RJZU01000098.1; RJZU01000169.1; RJZU01000111.1; RJZU01000132.1; RJZU01000159.1; RJZU01000199.1; RJZU01000170.1; RJZU01000128.1; RJZU01000062.1; RJZU01000006.1; RJZU01000172.1; RJZU01000078.1; RJZU01000158.1; RJZU01000004.1; RJZU01000173.1; RJZU01000121.1; RJZU01000065.1; RJZU01000175.1; RJZU01000069.1; RJZU01000177.1; RJZU01000002.1; RJZU01000074.1; RJZU01000016.1; RJZU01000028.1; RJZU01000142.1; RJZU01000194.1; RJZU01000049.1; RJZU01000161.1; RJZU01000143.1; RJZU01000027.1; RJZU01000181.1; RJZU01000178.1; RJZU01000077.1; RJZU01000179.1; RJZU01000114.1; RJZU01000048.1; RJZU01000001.1; RJZU01000117.1; RJZU01000118.1; RJZU01000176.1; RJZU01000182.1; RJZU01000104.1; RJZU01000174.1; RJZU01000106.1; RJZU01000141.1; RJZU01000164.1; RJZU01000119.1; RJZU01000109.1; RJZU01000122.1; RJZU01000184.1; RJZU01000185.1; RJZU01000186.1; RJZU01000082.1; RJZU01000188.1; RJZU01000189.1; RJZU01000045.1; RJZU01000076.1; RJZU01000094.1; RJZU01000124.1; RJZU01000127.1; RJZU01000129.1; RJZU01000131.1; RJZU01000190.1; RJZU01000110.1; RJZU01000036.1; RJZU01000030.1; RJZU01000056.1; RJZU01000040.1; RJZU01000095.1; RJZU01000103.1; RJZU01000072.1; RJZU01000018.1; RJZU01000116.1; RJZU01000137.1; RJZU01000154.1; RJZU01000025.1; RJZU01000054.1; RJZU01000060.1; RJZU01000092.1; RJZU01000112.1; RJZU01000134.1; RJZU01000192.1; RJZU01000107.1; RJZU01000123.1; RJZU01000148.1; RJZU01000147.1; RJZU01000050.1; RJZU01000068.1; RJZU01000087.1; RJZU01000193.1; RJZU01000195.1; RJZU01000080.1; RJZU01000041.1; RJZU01000166.1; RJZU01000160.1; RJZU01000086.1; RJZU01000017.1; RJZU01000057.1; RJZU01000093.1; RJZU01000126.1; RJZU01000196.1; RJZU01000059.1; RJZU01000135.1; RJZU01000011.1; RJZU01000024.1; RJZU01000052.1; RJZU01000038.1; RJZU01000113.1; RJZU01000031.1; RJZU01000067.1; RJZU01000073.1; RJZU01000021.1; RJZU01000064.1; RJZU01000020.1; RJZU01000019.1; RJZU01000061.1; RJZU01000043.1; RJZU01000115.1; RJZU01000071.1; RJZU01000155.1; RJZU01000051.1; RJZU01000144.1; RJZU01000097.1; RJZU01000022.1; RJZU01000026.1; RJZU01000009.1; RJZU01000133.1; RJZU01000075.1; RJZU01000091.1; RJZU01000168.1; RJZU01000012.1; RJZU01000023.1; RJZU01000044.1; RJZU01000032.1; RJZU01000066.1; RJZU01000099.1; RJZU01000083.1; RJZU01000081.1; RJZU01000130.1; RJZU01000145.1; RJZU01000085.1; RJZU01000136.1; RJZU01000183.1; RJZU01000039.1; RJZU01000149.1; RJZU01000102.1; RJZU01000150.1; RJZU01000180.1; RJZU01000146.1; RJZU01000165.1; RJZU01000084.1; RJZU01000046.1; RJZU01000090.1; RJZU01000014.1; RJZU01000151.1; RJZU01000140.1; RJZU01000152.1; RJZU01000138.1; RJZU01000089.1; RJZU01000007.1; RJZU01000003.1; RJZU01000063.1; RJZU01000108.1; RJZU01000047.1; RJZU01000035.1; RJZU01000101.1; RJZU01000058.1; RJZU01000191.1; RJZU01000139.1; RJZU01000029.1; RJZU01000120.1; RJZU01000079.1; RJZU01000153.1; RJZU01000156.1; RJZU01000187.1; RJZU01000162.1; RJZU01000100.1; RJZU01000197.1; RJZU01000198.1; RJZU01000033.1

Compact view

RJZU01000034.1 - Region 1 - Pyruvate2acetate-formate

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Location: 179 - 23,626 nt. (total: 23,448 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

RJZU01000042.1 - Region 1 - Others_HGD_unassigned

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Location: 46,759 - 71,783 nt. (total: 25,025 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

RJZU01000125.1 - Region 1 - Others_HGD_unassigned

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Location: 3,333 - 28,357 nt. (total: 25,025 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

RJZU01000096.1 - Region 1 - Others_HGD_unassigned

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Location: 1 - 13,445 nt. (total: 13,445 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

RJZU01000171.1 - Region 1 - Pyruvate2acetate-formate

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Location: 1,577 - 22,223 nt. (total: 20,647 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters