GCA_014856585.1 - 7 region(s)

Identified primary metabolite regions

VXJD01000107.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	histidine2glutamate_hutHGIU_operon	Other	30,372	55,783	Histidine to glutamate K. pneumoniae	GLU	60%

VXJD01000065.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Fumarate2succinate	SCFA	1	13,306	Acetate to butyrate C. sporogenes	BUT	33%

VXJD01000093.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	fatty_acids-unassigned	Putative	15,194	38,430	Acetate to butyrate C. sporogenes	BUT	50%

VXJD01000120.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	fatty_acids-unassigned	Putative	15,096	40,462	Acetate to butyrate C. sporogenes	BUT	33%

VXJD01000077.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 40.1	TPP_AA_metabolism	Putative	1	21,138

VXJD01000095.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 48.1	hydroxybenzoate2phenol	Aromatic	31,188	53,226	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

VXJD01000087.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	Putrescine2spermidine,Nitrate_reductase	E-MGC	1	42,681	Nitrate reductase E. coli	NIR	60%

No primary metabolite regions were found in these records:: VXJD01000103.1; VXJD01000027.1; VXJD01000113.1; VXJD01000032.1; VXJD01000102.1; VXJD01000028.1; VXJD01000115.1; VXJD01000057.1; VXJD01000091.1; VXJD01000117.1; VXJD01000109.1; VXJD01000110.1; VXJD01000080.1; VXJD01000084.1; VXJD01000104.1; VXJD01000090.1; VXJD01000100.1; VXJD01000068.1; VXJD01000070.1; VXJD01000094.1; VXJD01000055.1; VXJD01000119.1; VXJD01000089.1; VXJD01000075.1; VXJD01000105.1; VXJD01000118.1; VXJD01000112.1; VXJD01000072.1; VXJD01000096.1; VXJD01000076.1; VXJD01000082.1; VXJD01000092.1; VXJD01000031.1; VXJD01000053.1; VXJD01000108.1; VXJD01000036.1; VXJD01000085.1; VXJD01000078.1; VXJD01000058.1; VXJD01000038.1; VXJD01000088.1; VXJD01000074.1; VXJD01000098.1; VXJD01000097.1; VXJD01000069.1; VXJD01000101.1; VXJD01000086.1; VXJD01000071.1; VXJD01000079.1; VXJD01000049.1; VXJD01000106.1; VXJD01000114.1; VXJD01000064.1; VXJD01000067.1; VXJD01000045.1; VXJD01000029.1; VXJD01000063.1; VXJD01000081.1; VXJD01000061.1; VXJD01000083.1; VXJD01000073.1; VXJD01000050.1; VXJD01000111.1; VXJD01000062.1; VXJD01000052.1; VXJD01000046.1; VXJD01000030.1; VXJD01000066.1; VXJD01000060.1; VXJD01000059.1; VXJD01000051.1; VXJD01000047.1; VXJD01000054.1; VXJD01000116.1; VXJD01000037.1; VXJD01000034.1; VXJD01000040.1; VXJD01000056.1; VXJD01000041.1; VXJD01000048.1; VXJD01000044.1; VXJD01000042.1; VXJD01000099.1; VXJD01000043.1; VXJD01000033.1; VXJD01000035.1; VXJD01000039.1

Compact view

VXJD01000107.1 - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 30,372 - 55,783 nt. (total: 25,412 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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VXJD01000065.1 - Region 1 - Fumarate2succinate

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Location: 1 - 13,306 nt. (total: 13,306 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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KnownClusterBlast

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VXJD01000093.1 - Region 1 - fatty_acids-unassigned

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Location: 15,194 - 38,430 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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regulatory genes

resistance genes

encapsulation genes

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KnownClusterBlast

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VXJD01000120.1 - Region 1 - fatty_acids-unassigned

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Location: 15,096 - 40,462 nt. (total: 25,367 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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VXJD01000077.1 - Region 1 - TPP_AA_metabolism

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Location: 1 - 21,138 nt. (total: 21,138 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

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KnownClusterBlast

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No matches found.

VXJD01000095.1 - Region 1 - hydroxybenzoate2phenol

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Location: 31,188 - 53,226 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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VXJD01000087.1 - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 1 - 42,681 nt. (total: 42,681 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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