GCA_015160815.1 - 4 region(s)

Identified primary metabolite regions

JADDUJ010000001 (original name was: JADDUJ010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	gallic_acid_met	Aromatic	298,786	311,268	Gallic acid degradation B. sp. KLE	GALL	100%

JADDUJ010000015 (original name was: JADDUJ010000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Pyruvate2acetate-formate	SCFA	11,099	34,349	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JADDUJ010000016 (original name was: JADDUJ010000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	TPP_fatty_acids	Putative	47,658	65,623

JADDUJ010000006 (original name was: JADDUJ010000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	TPP_AA_metabolism	Putative	39,938	72,233

No primary metabolite regions were found in these records:: JADDUJ010000010 (original name was: JADDUJ010000010.1); JADDUJ010000011 (original name was: JADDUJ010000011.1); JADDUJ010000012 (original name was: JADDUJ010000012.1); JADDUJ010000013 (original name was: JADDUJ010000013.1); JADDUJ010000014 (original name was: JADDUJ010000014.1); JADDUJ010000017 (original name was: JADDUJ010000017.1); JADDUJ010000018 (original name was: JADDUJ010000018.1); JADDUJ010000019 (original name was: JADDUJ010000019.1); JADDUJ010000002 (original name was: JADDUJ010000002.1); JADDUJ010000020 (original name was: JADDUJ010000020.1); JADDUJ010000021 (original name was: JADDUJ010000021.1); JADDUJ010000022 (original name was: JADDUJ010000022.1); JADDUJ010000023 (original name was: JADDUJ010000023.1); JADDUJ010000024 (original name was: JADDUJ010000024.1); JADDUJ010000025 (original name was: JADDUJ010000025.1); JADDUJ010000026 (original name was: JADDUJ010000026.1); JADDUJ010000027 (original name was: JADDUJ010000027.1); JADDUJ010000028 (original name was: JADDUJ010000028.1); JADDUJ010000029 (original name was: JADDUJ010000029.1); JADDUJ010000003 (original name was: JADDUJ010000003.1); JADDUJ010000030 (original name was: JADDUJ010000030.1); JADDUJ010000031 (original name was: JADDUJ010000031.1); JADDUJ010000032 (original name was: JADDUJ010000032.1); JADDUJ010000033 (original name was: JADDUJ010000033.1); JADDUJ010000034 (original name was: JADDUJ010000034.1); JADDUJ010000035 (original name was: JADDUJ010000035.1); JADDUJ010000036 (original name was: JADDUJ010000036.1); JADDUJ010000037 (original name was: JADDUJ010000037.1); JADDUJ010000038 (original name was: JADDUJ010000038.1); JADDUJ010000039 (original name was: JADDUJ010000039.1); JADDUJ010000004 (original name was: JADDUJ010000004.1); JADDUJ010000040 (original name was: JADDUJ010000040.1); JADDUJ010000041 (original name was: JADDUJ010000041.1); JADDUJ010000042 (original name was: JADDUJ010000042.1); JADDUJ010000043 (original name was: JADDUJ010000043.1); JADDUJ010000044 (original name was: JADDUJ010000044.1); JADDUJ010000045 (original name was: JADDUJ010000045.1); JADDUJ010000046 (original name was: JADDUJ010000046.1); JADDUJ010000047 (original name was: JADDUJ010000047.1); JADDUJ010000048 (original name was: JADDUJ010000048.1); JADDUJ010000049 (original name was: JADDUJ010000049.1); JADDUJ010000005 (original name was: JADDUJ010000005.1); JADDUJ010000050 (original name was: JADDUJ010000050.1); JADDUJ010000051 (original name was: JADDUJ010000051.1); JADDUJ010000052 (original name was: JADDUJ010000052.1); JADDUJ010000053 (original name was: JADDUJ010000053.1); JADDUJ010000007 (original name was: JADDUJ010000007.1); JADDUJ010000008 (original name was: JADDUJ010000008.1); JADDUJ010000009 (original name was: JADDUJ010000009.1)

Compact view

c00001_JADDUJ0.. - Region 1 - gallic_acid_met

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Location: 298,786 - 311,268 nt. (total: 12,483 nt) Show pHMM detection rules used

Region on contig edge.

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00007_JADDUJ0.. - Region 1 - Pyruvate2acetate-formate

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Location: 11,099 - 34,349 nt. (total: 23,251 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00008_JADDUJ0.. - Region 1 - TPP_fatty_acids

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Location: 47,658 - 65,623 nt. (total: 17,966 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00050_JADDUJ0.. - Region 1 - TPP_AA_metabolism

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Location: 39,938 - 72,233 nt. (total: 32,296 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.