GCA_015547595.1 - 8 region(s)

Identified primary metabolite regions

JADMVL010000010 (original name was: JADMVL010000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	fatty_acids-unassigned	Putative	28,166	53,956	Acetate to butyrate C. sporogenes	BUT	33%

JADMVL010000017 (original name was: JADMVL010000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	Pyruvate2acetate-formate	SCFA	47,615	66,999	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JADMVL010000019 (original name was: JADMVL010000019.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	fatty_acids-unassigned	Putative	1	22,590	Acetate to butyrate C. sporogenes	BUT	33%

JADMVL010000001 (original name was: JADMVL010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	Oxidative_glycerol	Other	23,666	56,733
Region 34.2	TPP_AA_metabolism	Putative	153,786	185,023

JADMVL010000047 (original name was: JADMVL010000047.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 64.1	Putrescine2spermidine	Aliphatic_amine	1	17,887	Arginine2putrescine R. gnavus	PUTR	40%

JADMVL010000004 (original name was: JADMVL010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 67.1	TPP_AA_metabolism,fatty_acids-unassigned	Putative	1	54,062	Acetate to butyrate C. sporogenes	BUT	33%

JADMVL010000050 (original name was: JADMVL010000050.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 68.1	Fumarate2succinate	SCFA	2,895	21,097

No primary metabolite regions were found in these records:: JADMVL010000100 (original name was: JADMVL010000100.1); JADMVL010000101 (original name was: JADMVL010000101.1); JADMVL010000102 (original name was: JADMVL010000102.1); JADMVL010000103 (original name was: JADMVL010000103.1); JADMVL010000104 (original name was: JADMVL010000104.1); JADMVL010000105 (original name was: JADMVL010000105.1); JADMVL010000106 (original name was: JADMVL010000106.1); JADMVL010000107 (original name was: JADMVL010000107.1); JADMVL010000108 (original name was: JADMVL010000108.1); JADMVL010000109 (original name was: JADMVL010000109.1); JADMVL010000110 (original name was: JADMVL010000110.1); JADMVL010000111 (original name was: JADMVL010000111.1); JADMVL010000112 (original name was: JADMVL010000112.1); JADMVL010000113 (original name was: JADMVL010000113.1); JADMVL010000114 (original name was: JADMVL010000114.1); JADMVL010000115 (original name was: JADMVL010000115.1); JADMVL010000116 (original name was: JADMVL010000116.1); JADMVL010000117 (original name was: JADMVL010000117.1); JADMVL010000118 (original name was: JADMVL010000118.1); JADMVL010000119 (original name was: JADMVL010000119.1); JADMVL010000011 (original name was: JADMVL010000011.1); JADMVL010000120 (original name was: JADMVL010000120.1); JADMVL010000121 (original name was: JADMVL010000121.1); JADMVL010000122 (original name was: JADMVL010000122.1); JADMVL010000012 (original name was: JADMVL010000012.1); JADMVL010000013 (original name was: JADMVL010000013.1); JADMVL010000014 (original name was: JADMVL010000014.1); JADMVL010000015 (original name was: JADMVL010000015.1); JADMVL010000016 (original name was: JADMVL010000016.1); JADMVL010000018 (original name was: JADMVL010000018.1); JADMVL010000020 (original name was: JADMVL010000020.1); JADMVL010000021 (original name was: JADMVL010000021.1); JADMVL010000022 (original name was: JADMVL010000022.1); JADMVL010000023 (original name was: JADMVL010000023.1); JADMVL010000024 (original name was: JADMVL010000024.1); JADMVL010000025 (original name was: JADMVL010000025.1); JADMVL010000026 (original name was: JADMVL010000026.1); JADMVL010000027 (original name was: JADMVL010000027.1); JADMVL010000028 (original name was: JADMVL010000028.1); JADMVL010000029 (original name was: JADMVL010000029.1); JADMVL010000002 (original name was: JADMVL010000002.1); JADMVL010000030 (original name was: JADMVL010000030.1); JADMVL010000031 (original name was: JADMVL010000031.1); JADMVL010000032 (original name was: JADMVL010000032.1); JADMVL010000033 (original name was: JADMVL010000033.1); JADMVL010000034 (original name was: JADMVL010000034.1); JADMVL010000035 (original name was: JADMVL010000035.1); JADMVL010000036 (original name was: JADMVL010000036.1); JADMVL010000037 (original name was: JADMVL010000037.1); JADMVL010000038 (original name was: JADMVL010000038.1); JADMVL010000039 (original name was: JADMVL010000039.1); JADMVL010000003 (original name was: JADMVL010000003.1); JADMVL010000040 (original name was: JADMVL010000040.1); JADMVL010000041 (original name was: JADMVL010000041.1); JADMVL010000042 (original name was: JADMVL010000042.1); JADMVL010000043 (original name was: JADMVL010000043.1); JADMVL010000044 (original name was: JADMVL010000044.1); JADMVL010000045 (original name was: JADMVL010000045.1); JADMVL010000046 (original name was: JADMVL010000046.1); JADMVL010000048 (original name was: JADMVL010000048.1); JADMVL010000049 (original name was: JADMVL010000049.1); JADMVL010000051 (original name was: JADMVL010000051.1); JADMVL010000052 (original name was: JADMVL010000052.1); JADMVL010000053 (original name was: JADMVL010000053.1); JADMVL010000054 (original name was: JADMVL010000054.1); JADMVL010000055 (original name was: JADMVL010000055.1); JADMVL010000056 (original name was: JADMVL010000056.1); JADMVL010000057 (original name was: JADMVL010000057.1); JADMVL010000058 (original name was: JADMVL010000058.1); JADMVL010000059 (original name was: JADMVL010000059.1); JADMVL010000005 (original name was: JADMVL010000005.1); JADMVL010000060 (original name was: JADMVL010000060.1); JADMVL010000061 (original name was: JADMVL010000061.1); JADMVL010000062 (original name was: JADMVL010000062.1); JADMVL010000063 (original name was: JADMVL010000063.1); JADMVL010000064 (original name was: JADMVL010000064.1); JADMVL010000065 (original name was: JADMVL010000065.1); JADMVL010000066 (original name was: JADMVL010000066.1); JADMVL010000067 (original name was: JADMVL010000067.1); JADMVL010000068 (original name was: JADMVL010000068.1); JADMVL010000069 (original name was: JADMVL010000069.1); JADMVL010000006 (original name was: JADMVL010000006.1); JADMVL010000070 (original name was: JADMVL010000070.1); JADMVL010000071 (original name was: JADMVL010000071.1); JADMVL010000072 (original name was: JADMVL010000072.1); JADMVL010000073 (original name was: JADMVL010000073.1); JADMVL010000074 (original name was: JADMVL010000074.1); JADMVL010000075 (original name was: JADMVL010000075.1); JADMVL010000076 (original name was: JADMVL010000076.1); JADMVL010000077 (original name was: JADMVL010000077.1); JADMVL010000078 (original name was: JADMVL010000078.1); JADMVL010000079 (original name was: JADMVL010000079.1); JADMVL010000007 (original name was: JADMVL010000007.1); JADMVL010000080 (original name was: JADMVL010000080.1); JADMVL010000081 (original name was: JADMVL010000081.1); JADMVL010000082 (original name was: JADMVL010000082.1); JADMVL010000083 (original name was: JADMVL010000083.1); JADMVL010000084 (original name was: JADMVL010000084.1); JADMVL010000085 (original name was: JADMVL010000085.1); JADMVL010000086 (original name was: JADMVL010000086.1); JADMVL010000087 (original name was: JADMVL010000087.1); JADMVL010000088 (original name was: JADMVL010000088.1); JADMVL010000089 (original name was: JADMVL010000089.1); JADMVL010000008 (original name was: JADMVL010000008.1); JADMVL010000090 (original name was: JADMVL010000090.1); JADMVL010000091 (original name was: JADMVL010000091.1); JADMVL010000092 (original name was: JADMVL010000092.1); JADMVL010000093 (original name was: JADMVL010000093.1); JADMVL010000094 (original name was: JADMVL010000094.1); JADMVL010000095 (original name was: JADMVL010000095.1); JADMVL010000096 (original name was: JADMVL010000096.1); JADMVL010000097 (original name was: JADMVL010000097.1); JADMVL010000098 (original name was: JADMVL010000098.1); JADMVL010000099 (original name was: JADMVL010000099.1); JADMVL010000009 (original name was: JADMVL010000009.1)

Compact view

c00011_JADMVL0.. - Region 1 - fatty_acids-unassigned

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Location: 28,166 - 53,956 nt. (total: 25,791 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00031_JADMVL0.. - Region 1 - Pyruvate2acetate-formate

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Location: 47,615 - 66,999 nt. (total: 19,385 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

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c00033_JADMVL0.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 22,590 nt. (total: 22,590 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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KnownClusterBlast

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c00034_JADMVL0.. - Region 1 - Oxidative_glycerol

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Location: 23,666 - 56,733 nt. (total: 33,068 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

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core biosynthetic genes

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No matches found.

c00034_JADMVL0.. - Region 2 - TPP_AA_metabolism

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Location: 153,786 - 185,023 nt. (total: 31,238 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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KnownClusterBlast

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c00064_JADMVL0.. - Region 1 - Putrescine2spermidine

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Location: 1 - 17,887 nt. (total: 17,887 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

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c00067_JADMVL0.. - Region 1 - TPP_AA_metabolism,fatty_acids-unassigned

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Location: 1 - 54,062 nt. (total: 54,062 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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c00068_JADMVL0.. - Region 1 - Fumarate2succinate

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Location: 2,895 - 21,097 nt. (total: 18,203 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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