GCA_015548835.1 - 4 region(s)

Identified primary metabolite regions

JADMXU010000010 (original name was: JADMXU010000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Pyruvate2acetate-formate	SCFA	91,902	115,152	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JADMXU010000001 (original name was: JADMXU010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	TPP_fatty_acids	Putative	280,394	306,391

JADMXU010000002 (original name was: JADMXU010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_AA_metabolism	Putative	242,193	274,254

JADMXU010000004 (original name was: JADMXU010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	gallic_acid_met	Aromatic	33,887	55,944	Gallic acid degradation B. sp. KLE	GALL	100%

No primary metabolite regions were found in these records:: JADMXU010000011 (original name was: JADMXU010000011.1); JADMXU010000012 (original name was: JADMXU010000012.1); JADMXU010000013 (original name was: JADMXU010000013.1); JADMXU010000014 (original name was: JADMXU010000014.1); JADMXU010000015 (original name was: JADMXU010000015.1); JADMXU010000016 (original name was: JADMXU010000016.1); JADMXU010000017 (original name was: JADMXU010000017.1); JADMXU010000018 (original name was: JADMXU010000018.1); JADMXU010000019 (original name was: JADMXU010000019.1); JADMXU010000020 (original name was: JADMXU010000020.1); JADMXU010000021 (original name was: JADMXU010000021.1); JADMXU010000022 (original name was: JADMXU010000022.1); JADMXU010000023 (original name was: JADMXU010000023.1); JADMXU010000024 (original name was: JADMXU010000024.1); JADMXU010000025 (original name was: JADMXU010000025.1); JADMXU010000026 (original name was: JADMXU010000026.1); JADMXU010000027 (original name was: JADMXU010000027.1); JADMXU010000028 (original name was: JADMXU010000028.1); JADMXU010000029 (original name was: JADMXU010000029.1); JADMXU010000030 (original name was: JADMXU010000030.1); JADMXU010000031 (original name was: JADMXU010000031.1); JADMXU010000032 (original name was: JADMXU010000032.1); JADMXU010000033 (original name was: JADMXU010000033.1); JADMXU010000003 (original name was: JADMXU010000003.1); JADMXU010000005 (original name was: JADMXU010000005.1); JADMXU010000006 (original name was: JADMXU010000006.1); JADMXU010000007 (original name was: JADMXU010000007.1); JADMXU010000008 (original name was: JADMXU010000008.1); JADMXU010000009 (original name was: JADMXU010000009.1)

Compact view

c00001_JADMXU0.. - Region 1 - Pyruvate2acetate-formate

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Location: 91,902 - 115,152 nt. (total: 23,251 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00011_JADMXU0.. - Region 1 - TPP_fatty_acids

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Location: 280,394 - 306,391 nt. (total: 25,998 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

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Gene details

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KnownClusterBlast

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No matches found.

c00022_JADMXU0.. - Region 1 - TPP_AA_metabolism

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Location: 242,193 - 274,254 nt. (total: 32,062 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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regulatory genes

resistance genes

encapsulation genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00028_JADMXU0.. - Region 1 - gallic_acid_met

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Location: 33,887 - 55,944 nt. (total: 22,058 nt) Show pHMM detection rules used

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters