GCA_015549915.1 - 3 region(s)

Identified primary metabolite regions

JADMZT010000002 (original name was: JADMZT010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Pyruvate2acetate-formate	SCFA	143,126	166,504	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JADMZT010000003 (original name was: JADMZT010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Fumarate2succinate	SCFA	97,512	120,356	Fumarate2succinate suc dh E. coli	SUC	100%

JADMZT010000004 (original name was: JADMZT010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Others_HGD_unassigned	Putative	12,133	36,891

No primary metabolite regions were found in these records:: JADMZT010000010 (original name was: JADMZT010000010.1); JADMZT010000011 (original name was: JADMZT010000011.1); JADMZT010000012 (original name was: JADMZT010000012.1); JADMZT010000013 (original name was: JADMZT010000013.1); JADMZT010000014 (original name was: JADMZT010000014.1); JADMZT010000001 (original name was: JADMZT010000001.1); JADMZT010000005 (original name was: JADMZT010000005.1); JADMZT010000006 (original name was: JADMZT010000006.1); JADMZT010000007 (original name was: JADMZT010000007.1); JADMZT010000008 (original name was: JADMZT010000008.1); JADMZT010000009 (original name was: JADMZT010000009.1)

Compact view

c00007_JADMZT0.. - Region 1 - Pyruvate2acetate-formate

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Location: 143,126 - 166,504 nt. (total: 23,379 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00008_JADMZT0.. - Region 1 - Fumarate2succinate

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Location: 97,512 - 120,356 nt. (total: 22,845 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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c00009_JADMZT0.. - Region 1 - Others_HGD_unassigned

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Location: 12,133 - 36,891 nt. (total: 24,759 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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