GCA_015556885.1 - 3 region(s)

Identified primary metabolite regions

JADNNG010000043 (original name was: JADNNG010000043.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Fumarate2succinate	SCFA	1	15,320

JADNNG010000004 (original name was: JADNNG010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 42.1	Others_HGD_unassigned	Putative	12,120	36,842

JADNNG010000005 (original name was: JADNNG010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	Pyruvate2acetate-formate	SCFA	15,976	39,352	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 9.1	Fumarate2succinate	SCFA	1	15,320
Region 42.1	Others_HGD_unassigned	Putative	12,120	36,842
Region 49.1	Pyruvate2acetate-formate	SCFA	15,976	39,352	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: JADNNG010000036 (original name was: JADNNG010000036.1); JADNNG010000037 (original name was: JADNNG010000037.1); JADNNG010000038 (original name was: JADNNG010000038.1); JADNNG010000006 (original name was: JADNNG010000006.1); JADNNG010000039 (original name was: JADNNG010000039.1); JADNNG010000040 (original name was: JADNNG010000040.1); JADNNG010000041 (original name was: JADNNG010000041.1); JADNNG010000042 (original name was: JADNNG010000042.1); JADNNG010000007 (original name was: JADNNG010000007.1); JADNNG010000044 (original name was: JADNNG010000044.1); JADNNG010000045 (original name was: JADNNG010000045.1); JADNNG010000046 (original name was: JADNNG010000046.1); JADNNG010000047 (original name was: JADNNG010000047.1); JADNNG010000048 (original name was: JADNNG010000048.1); JADNNG010000049 (original name was: JADNNG010000049.1); JADNNG010000008 (original name was: JADNNG010000008.1); JADNNG010000050 (original name was: JADNNG010000050.1); JADNNG010000051 (original name was: JADNNG010000051.1); JADNNG010000052 (original name was: JADNNG010000052.1); JADNNG010000009 (original name was: JADNNG010000009.1); JADNNG010000010 (original name was: JADNNG010000010.1); JADNNG010000011 (original name was: JADNNG010000011.1); JADNNG010000001 (original name was: JADNNG010000001.1); JADNNG010000012 (original name was: JADNNG010000012.1); JADNNG010000013 (original name was: JADNNG010000013.1); JADNNG010000014 (original name was: JADNNG010000014.1); JADNNG010000002 (original name was: JADNNG010000002.1); JADNNG010000015 (original name was: JADNNG010000015.1); JADNNG010000016 (original name was: JADNNG010000016.1); JADNNG010000017 (original name was: JADNNG010000017.1); JADNNG010000003 (original name was: JADNNG010000003.1); JADNNG010000018 (original name was: JADNNG010000018.1); JADNNG010000019 (original name was: JADNNG010000019.1); JADNNG010000020 (original name was: JADNNG010000020.1); JADNNG010000021 (original name was: JADNNG010000021.1); JADNNG010000022 (original name was: JADNNG010000022.1); JADNNG010000023 (original name was: JADNNG010000023.1); JADNNG010000024 (original name was: JADNNG010000024.1); JADNNG010000025 (original name was: JADNNG010000025.1); JADNNG010000026 (original name was: JADNNG010000026.1); JADNNG010000027 (original name was: JADNNG010000027.1); JADNNG010000028 (original name was: JADNNG010000028.1); JADNNG010000029 (original name was: JADNNG010000029.1); JADNNG010000030 (original name was: JADNNG010000030.1); JADNNG010000031 (original name was: JADNNG010000031.1); JADNNG010000032 (original name was: JADNNG010000032.1); JADNNG010000033 (original name was: JADNNG010000033.1); JADNNG010000034 (original name was: JADNNG010000034.1); JADNNG010000035 (original name was: JADNNG010000035.1)

Compact view

c00009_JADNNG0.. - Region 1 - Fumarate2succinate

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Location: 1 - 15,320 nt. (total: 15,320 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00042_JADNNG0.. - Region 1 - Others_HGD_unassigned

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Location: 12,120 - 36,842 nt. (total: 24,723 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00049_JADNNG0.. - Region 1 - Pyruvate2acetate-formate

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Location: 15,976 - 39,352 nt. (total: 23,377 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters