GCA_015594965.1 - 3 region(s)

Identified primary metabolite regions

JADOAW010000017 (original name was: JADOAW010000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	TPP_AA_metabolism	Putative	28,939	52,669

JADOAW010000006 (original name was: JADOAW010000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 93.1	Pyruvate2acetate-formate	SCFA	1	15,504	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JADOAW010000008 (original name was: JADOAW010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 115.1	TPP_fatty_acids	Putative	26,445	52,146

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 35.1	TPP_AA_metabolism	Putative	28,939	52,669
Region 93.1	Pyruvate2acetate-formate	SCFA	1	15,504	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 115.1	TPP_fatty_acids	Putative	26,445	52,146

No primary metabolite regions were found in these records:: JADOAW010000100 (original name was: JADOAW010000100.1); JADOAW010000101 (original name was: JADOAW010000101.1); JADOAW010000102 (original name was: JADOAW010000102.1); JADOAW010000103 (original name was: JADOAW010000103.1); JADOAW010000104 (original name was: JADOAW010000104.1); JADOAW010000105 (original name was: JADOAW010000105.1); JADOAW010000106 (original name was: JADOAW010000106.1); JADOAW010000107 (original name was: JADOAW010000107.1); JADOAW010000108 (original name was: JADOAW010000108.1); JADOAW010000109 (original name was: JADOAW010000109.1); JADOAW010000010 (original name was: JADOAW010000010.1); JADOAW010000110 (original name was: JADOAW010000110.1); JADOAW010000111 (original name was: JADOAW010000111.1); JADOAW010000112 (original name was: JADOAW010000112.1); JADOAW010000113 (original name was: JADOAW010000113.1); JADOAW010000114 (original name was: JADOAW010000114.1); JADOAW010000115 (original name was: JADOAW010000115.1); JADOAW010000116 (original name was: JADOAW010000116.1); JADOAW010000117 (original name was: JADOAW010000117.1); JADOAW010000118 (original name was: JADOAW010000118.1); JADOAW010000119 (original name was: JADOAW010000119.1); JADOAW010000011 (original name was: JADOAW010000011.1); JADOAW010000120 (original name was: JADOAW010000120.1); JADOAW010000121 (original name was: JADOAW010000121.1); JADOAW010000122 (original name was: JADOAW010000122.1); JADOAW010000123 (original name was: JADOAW010000123.1); JADOAW010000124 (original name was: JADOAW010000124.1); JADOAW010000125 (original name was: JADOAW010000125.1); JADOAW010000126 (original name was: JADOAW010000126.1); JADOAW010000012 (original name was: JADOAW010000012.1); JADOAW010000013 (original name was: JADOAW010000013.1); JADOAW010000014 (original name was: JADOAW010000014.1); JADOAW010000015 (original name was: JADOAW010000015.1); JADOAW010000016 (original name was: JADOAW010000016.1); JADOAW010000018 (original name was: JADOAW010000018.1); JADOAW010000019 (original name was: JADOAW010000019.1); JADOAW010000001 (original name was: JADOAW010000001.1); JADOAW010000020 (original name was: JADOAW010000020.1); JADOAW010000021 (original name was: JADOAW010000021.1); JADOAW010000022 (original name was: JADOAW010000022.1); JADOAW010000023 (original name was: JADOAW010000023.1); JADOAW010000024 (original name was: JADOAW010000024.1); JADOAW010000025 (original name was: JADOAW010000025.1); JADOAW010000026 (original name was: JADOAW010000026.1); JADOAW010000027 (original name was: JADOAW010000027.1); JADOAW010000028 (original name was: JADOAW010000028.1); JADOAW010000029 (original name was: JADOAW010000029.1); JADOAW010000002 (original name was: JADOAW010000002.1); JADOAW010000030 (original name was: JADOAW010000030.1); JADOAW010000031 (original name was: JADOAW010000031.1); JADOAW010000032 (original name was: JADOAW010000032.1); JADOAW010000033 (original name was: JADOAW010000033.1); JADOAW010000034 (original name was: JADOAW010000034.1); JADOAW010000035 (original name was: JADOAW010000035.1); JADOAW010000036 (original name was: JADOAW010000036.1); JADOAW010000037 (original name was: JADOAW010000037.1); JADOAW010000038 (original name was: JADOAW010000038.1); JADOAW010000039 (original name was: JADOAW010000039.1); JADOAW010000003 (original name was: JADOAW010000003.1); JADOAW010000040 (original name was: JADOAW010000040.1); JADOAW010000041 (original name was: JADOAW010000041.1); JADOAW010000042 (original name was: JADOAW010000042.1); JADOAW010000043 (original name was: JADOAW010000043.1); JADOAW010000044 (original name was: JADOAW010000044.1); JADOAW010000045 (original name was: JADOAW010000045.1); JADOAW010000046 (original name was: JADOAW010000046.1); JADOAW010000047 (original name was: JADOAW010000047.1); JADOAW010000048 (original name was: JADOAW010000048.1); JADOAW010000049 (original name was: JADOAW010000049.1); JADOAW010000004 (original name was: JADOAW010000004.1); JADOAW010000050 (original name was: JADOAW010000050.1); JADOAW010000051 (original name was: JADOAW010000051.1); JADOAW010000052 (original name was: JADOAW010000052.1); JADOAW010000053 (original name was: JADOAW010000053.1); JADOAW010000054 (original name was: JADOAW010000054.1); JADOAW010000055 (original name was: JADOAW010000055.1); JADOAW010000056 (original name was: JADOAW010000056.1); JADOAW010000057 (original name was: JADOAW010000057.1); JADOAW010000058 (original name was: JADOAW010000058.1); JADOAW010000059 (original name was: JADOAW010000059.1); JADOAW010000005 (original name was: JADOAW010000005.1); JADOAW010000060 (original name was: JADOAW010000060.1); JADOAW010000061 (original name was: JADOAW010000061.1); JADOAW010000062 (original name was: JADOAW010000062.1); JADOAW010000063 (original name was: JADOAW010000063.1); JADOAW010000064 (original name was: JADOAW010000064.1); JADOAW010000065 (original name was: JADOAW010000065.1); JADOAW010000066 (original name was: JADOAW010000066.1); JADOAW010000067 (original name was: JADOAW010000067.1); JADOAW010000068 (original name was: JADOAW010000068.1); JADOAW010000069 (original name was: JADOAW010000069.1); JADOAW010000070 (original name was: JADOAW010000070.1); JADOAW010000071 (original name was: JADOAW010000071.1); JADOAW010000072 (original name was: JADOAW010000072.1); JADOAW010000073 (original name was: JADOAW010000073.1); JADOAW010000074 (original name was: JADOAW010000074.1); JADOAW010000075 (original name was: JADOAW010000075.1); JADOAW010000076 (original name was: JADOAW010000076.1); JADOAW010000077 (original name was: JADOAW010000077.1); JADOAW010000078 (original name was: JADOAW010000078.1); JADOAW010000079 (original name was: JADOAW010000079.1); JADOAW010000007 (original name was: JADOAW010000007.1); JADOAW010000080 (original name was: JADOAW010000080.1); JADOAW010000081 (original name was: JADOAW010000081.1); JADOAW010000082 (original name was: JADOAW010000082.1); JADOAW010000083 (original name was: JADOAW010000083.1); JADOAW010000084 (original name was: JADOAW010000084.1); JADOAW010000085 (original name was: JADOAW010000085.1); JADOAW010000086 (original name was: JADOAW010000086.1); JADOAW010000087 (original name was: JADOAW010000087.1); JADOAW010000088 (original name was: JADOAW010000088.1); JADOAW010000089 (original name was: JADOAW010000089.1); JADOAW010000090 (original name was: JADOAW010000090.1); JADOAW010000091 (original name was: JADOAW010000091.1); JADOAW010000092 (original name was: JADOAW010000092.1); JADOAW010000093 (original name was: JADOAW010000093.1); JADOAW010000094 (original name was: JADOAW010000094.1); JADOAW010000095 (original name was: JADOAW010000095.1); JADOAW010000096 (original name was: JADOAW010000096.1); JADOAW010000097 (original name was: JADOAW010000097.1); JADOAW010000098 (original name was: JADOAW010000098.1); JADOAW010000099 (original name was: JADOAW010000099.1); JADOAW010000009 (original name was: JADOAW010000009.1)

Compact view

c00035_JADOAW0.. - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 28,939 - 52,669 nt. (total: 23,731 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00093_JADOAW0.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 1 - 15,504 nt. (total: 15,504 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00115_JADOAW0.. - Region 1 - TPP_fatty_acids

Download region GenBank file

Location: 26,445 - 52,146 nt. (total: 25,702 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.