GCA_015645615.1 - 18 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

JADOXQ010000001 (original name was: JADOXQ010000001.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	terpene	197,823	218,626
Region 1.2	transAT-PKS,PKS-like,T3PKS,NRPS	811,648	916,894	bacillaene	Polyketide + NRP	100%
Region 1.3	NRPS,betalactone	988,083	1,015,550	fengycin	NRP	73%

JADOXQ010000018 (original name was: JADOXQ010000018.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	NRPS	1	12,752	plipastatin	NRP	38%

JADOXQ010000019 (original name was: JADOXQ010000019.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	NRPS	1	9,525	plipastatin	NRP	15%

JADOXQ010000002 (original name was: JADOXQ010000002.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	NRPS	81,790	128,926	bacillibactin	NRP	100%
Region 12.2	CDPS	415,093	435,839
Region 12.3	sactipeptide	647,357	668,968	subtilosin A	RiPP:Thiopeptide	100%
Region 12.4	other	671,967	713,385	bacilysin	Other	100%

JADOXQ010000020 (original name was: JADOXQ010000020.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	NRPS	1	9,073	surfactin	NRP:Lipopeptide	8%

JADOXQ010000003 (original name was: JADOXQ010000003.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	glycocin	1	15,709	sublancin 168	RiPP:Lanthipeptide	100%
Region 23.2	T3PKS	32,974	74,071

JADOXQ010000005 (original name was: JADOXQ010000005.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 45.1	NRPS	1	27,752	surfactin	NRP:Lipopeptide	43%
Region 45.2	sactipeptide,ranthipeptide	157,824	180,777	sporulation killing factor	RiPP:Head-to-tailcyclized peptide	100%

JADOXQ010000006 (original name was: JADOXQ010000006.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 49.1	NRPS	134,334	159,518	surfactin	NRP:Lipopeptide	43%

JADOXQ010000007 (original name was: JADOXQ010000007.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 50.1	terpene	95,620	117,518

JADOXQ010000008 (original name was: JADOXQ010000008.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 51.1	RRE-containing	1	11,108
Region 51.2	epipeptide	18,431	40,129	thailanstatin A	NRP + Polyketide	10%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	terpene	197,823	218,626
Region 1.2	transAT-PKS,PKS-like,T3PKS,NRPS	811,648	916,894	bacillaene	Polyketide + NRP	100%
Region 1.3	NRPS,betalactone	988,083	1,015,550	fengycin	NRP	73%
Region 10.1	NRPS	1	12,752	plipastatin	NRP	38%
Region 11.1	NRPS	1	9,525	plipastatin	NRP	15%
Region 12.1	NRPS	81,790	128,926	bacillibactin	NRP	100%
Region 12.2	CDPS	415,093	435,839
Region 12.3	sactipeptide	647,357	668,968	subtilosin A	RiPP:Thiopeptide	100%
Region 12.4	other	671,967	713,385	bacilysin	Other	100%
Region 13.1	NRPS	1	9,073	surfactin	NRP:Lipopeptide	8%
Region 23.1	glycocin	1	15,709	sublancin 168	RiPP:Lanthipeptide	100%
Region 23.2	T3PKS	32,974	74,071
Region 45.1	NRPS	1	27,752	surfactin	NRP:Lipopeptide	43%
Region 45.2	sactipeptide,ranthipeptide	157,824	180,777	sporulation killing factor	RiPP:Head-to-tailcyclized peptide	100%
Region 49.1	NRPS	134,334	159,518	surfactin	NRP:Lipopeptide	43%
Region 50.1	terpene	95,620	117,518
Region 51.1	RRE-containing	1	11,108
Region 51.2	epipeptide	18,431	40,129	thailanstatin A	NRP + Polyketide	10%

No secondary metabolite regions were found in these records:: JADOXQ010000010 (original name was: JADOXQ010000010.1); JADOXQ010000011 (original name was: JADOXQ010000011.1); JADOXQ010000012 (original name was: JADOXQ010000012.1); JADOXQ010000013 (original name was: JADOXQ010000013.1); JADOXQ010000014 (original name was: JADOXQ010000014.1); JADOXQ010000015 (original name was: JADOXQ010000015.1); JADOXQ010000016 (original name was: JADOXQ010000016.1); JADOXQ010000017 (original name was: JADOXQ010000017.1); JADOXQ010000021 (original name was: JADOXQ010000021.1); JADOXQ010000022 (original name was: JADOXQ010000022.1); JADOXQ010000023 (original name was: JADOXQ010000023.1); JADOXQ010000024 (original name was: JADOXQ010000024.1); JADOXQ010000025 (original name was: JADOXQ010000025.1); JADOXQ010000026 (original name was: JADOXQ010000026.1); JADOXQ010000027 (original name was: JADOXQ010000027.1); JADOXQ010000028 (original name was: JADOXQ010000028.1); JADOXQ010000029 (original name was: JADOXQ010000029.1); JADOXQ010000030 (original name was: JADOXQ010000030.1); JADOXQ010000031 (original name was: JADOXQ010000031.1); JADOXQ010000032 (original name was: JADOXQ010000032.1); JADOXQ010000033 (original name was: JADOXQ010000033.1); JADOXQ010000034 (original name was: JADOXQ010000034.1); JADOXQ010000035 (original name was: JADOXQ010000035.1); JADOXQ010000036 (original name was: JADOXQ010000036.1); JADOXQ010000037 (original name was: JADOXQ010000037.1); JADOXQ010000038 (original name was: JADOXQ010000038.1); JADOXQ010000039 (original name was: JADOXQ010000039.1); JADOXQ010000004 (original name was: JADOXQ010000004.1); JADOXQ010000040 (original name was: JADOXQ010000040.1); JADOXQ010000041 (original name was: JADOXQ010000041.1); JADOXQ010000042 (original name was: JADOXQ010000042.1); JADOXQ010000043 (original name was: JADOXQ010000043.1); JADOXQ010000044 (original name was: JADOXQ010000044.1); JADOXQ010000045 (original name was: JADOXQ010000045.1); JADOXQ010000046 (original name was: JADOXQ010000046.1); JADOXQ010000047 (original name was: JADOXQ010000047.1); JADOXQ010000048 (original name was: JADOXQ010000048.1); JADOXQ010000049 (original name was: JADOXQ010000049.1); JADOXQ010000050 (original name was: JADOXQ010000050.1); JADOXQ010000051 (original name was: JADOXQ010000051.1); JADOXQ010000052 (original name was: JADOXQ010000052.1); JADOXQ010000009 (original name was: JADOXQ010000009.1)

Compact view

c00001_JADOXQ0.. - Region 1 - terpene

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Location: 197,823 - 218,626 nt. (total: 20,804 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00001_JADOXQ0.. - Region 2 - NRPS,PKS-like,T3PKS,transAT-PKS

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Location: 811,648 - 916,894 nt. (total: 105,247 nt) Show pHMM detection rules used

transAT-PKS: (cds(PKS_AT and not (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)) and (cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)) or cds(tra_KS and PP-binding)))
PKS-like: (t2pks2 or ksIII)
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 811647 - 916894:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - ccmal - ohmal - mal) + (mal - ccmal - mal - ohmal - mal) + (mal - ccmal - ohmal - mal) + (X - ccmal - ccmal - ccmal) + (ccmal - mal - mal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 811647 - 902226:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - ccmal - ohmal - mal) + (mal - ccmal - mal - ohmal - mal) + (mal - ccmal - ohmal - mal) + (X - ccmal - ccmal - ccmal) + (ccmal - mal - mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_854

PKS_AT (4..284): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 62.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 99.9
Methoxymalonyl-CoA: 55.7
Methylmalonyl-CoA: 38.0
inactive: 36.3
Propionyl-CoA: 24.0
2-Methylbutyryl-CoA: 13.4
Isobutyryl-CoA: 13.2
Ethylmalonyl-CoA: 12.1
CHC-CoA: 10.6
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

ctg1_855

PKS_AT (7..293): pk

ATSignature: (unknown)

No matches above 50%

minowa: inactive

Prediction, score:

inactive: 30.1
Malonyl-CoA: 24.5
Benzoyl-CoA: 8.7
Isobutyryl-CoA: 8.6
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Methylmalonyl-CoA: 0.0
Methoxymalonyl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ctg1_856

PKS_AT (4..288): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 66.7%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 96.2
inactive: 40.7
Methoxymalonyl-CoA: 29.2
Methylmalonyl-CoA: 22.2
Propionyl-CoA: 16.2
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ctg1_862

Search NORINE for peptide: strict or relaxed

CAL_domain (60..476): pk

minowa: fatty_acid

Prediction, score:

fatty_acid: 16.2
NH2: 10.3
shikimic_acid: 0.0
Acetyl-CoA: 0.0
AHBA: 0.0

AMP-binding (1159..1554): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

ctg1_865

Search NORINE for peptide: strict or relaxed

AMP-binding (497..905): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVsnmAiIYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 60% (weak)

c00001_JADOXQ0.. - Region 3 - NRPS,betalactone

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Location: 988,083 - 1,015,550 nt. (total: 27,468 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 4, location 988082 - 1015550:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-tyr) + (ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_977

Search NORINE for peptide: strict or relaxed

AMP-binding (13..445): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gclhIAApvK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 40% (weak)

ctg1_981

Search NORINE for peptide: strict or relaxed

AMP-binding (474..867): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFYGITFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

ctg1_982

Search NORINE for peptide: strict or relaxed

AMP-binding (141..535): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DGTITAEVAK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

c00010_JADOXQ0.. - Region 1 - NRPS

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Location: 1 - 12,752 nt. (total: 12,752 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 12752:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-orn) + (tyr - D-thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg10_1

Search NORINE for peptide: strict or relaxed

AMP-binding (142..547): orn

NRPSPredictor2: orn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGEIGSIDK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 100% (strong)

ctg10_2

Search NORINE for peptide: strict or relaxed

AMP-binding (474..865): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DGTITAEVAK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

AMP-binding (1505..1903): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

c00011_JADOXQ0.. - Region 1 - NRPS

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Location: 1 - 9,525 nt. (total: 9,525 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 9525:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-val) + (pro)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg11_1

Search NORINE for peptide: strict or relaxed

AMP-binding (172..565): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DVFWIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

ctg11_2

Search NORINE for peptide: strict or relaxed

AMP-binding (468..865): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFIAHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 100% (strong)

AMP-binding (1499..1900): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWHFGSVEK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

c00012_JADOXQ0.. - Region 1 - NRPS

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Location: 81,790 - 128,926 nt. (total: 47,137 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 81789 - 128926:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg12_101

Search NORINE for peptide: strict or relaxed

AMP-binding (463..861): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

AMP-binding (1519..1935): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg12_103

Search NORINE for peptide: strict or relaxed

AMP-binding (31..435): dhb

NRPSPredictor2: dhb

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: PLPAQGVVNK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 100% (strong)

c00012_JADOXQ0.. - Region 2 - CDPS

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Location: 415,093 - 435,839 nt. (total: 20,747 nt) Show pHMM detection rules used

CDPS: (CDPS or cycdipepsynth)

Legend:

core biosynthetic genes

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regulatory genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00012_JADOXQ0.. - Region 3 - sactipeptide

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Location: 647,357 - 668,968 nt. (total: 21,612 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or Subtilosin_A or skfc)

Legend:

core biosynthetic genes

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KnownClusterBlast

Sactipeptides

Similar known gene clusters

Sactipeptide predictions

Putative Sactipeptide(s)

ctg12_653 leader / core peptide: MKKAVIVENK - GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

Sactipeptides

Core peptide predictions

ctg12_653: Putative sactipeptide; RODEO score: 33.0; Core sequence, approximate: GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

c00012_JADOXQ0.. - Region 4 - other

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Location: 671,967 - 713,385 nt. (total: 41,419 nt) Show pHMM detection rules used

other: (LmbU or Neocarzinostat or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin or orf2_PTase)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00013_JADOXQ0.. - Region 1 - NRPS

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Location: 1 - 9,073 nt. (total: 9,073 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 9073:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - asp)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg13_2

Search NORINE for peptide: strict or relaxed

AMP-binding (470..864): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

AMP-binding (1501..1904): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHIGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

c00023_JADOXQ0.. - Region 1 - glycocin

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Location: 1 - 15,709 nt. (total: 15,709 nt) Show pHMM detection rules used

Region on contig edge.

glycocin: (glycocin or sublancin)

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c00023_JADOXQ0.. - Region 2 - T3PKS

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Location: 32,974 - 74,071 nt. (total: 41,098 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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No matches found.

c00045_JADOXQ0.. - Region 1 - NRPS

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Location: 1 - 27,752 nt. (total: 27,752 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 27752:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg45_1

Search NORINE for peptide: strict or relaxed

AMP-binding (466..867): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAKDLGVVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (1510..1908): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFMMGMVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

c00045_JADOXQ0.. - Region 2 - ranthipeptide,sactipeptide

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Location: 157,824 - 180,777 nt. (total: 22,954 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or Subtilosin_A or skfc)
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

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Sactipeptides

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Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.

c00049_JADOXQ0.. - Region 1 - NRPS

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Location: 134,334 - 159,518 nt. (total: 25,185 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 134333 - 159518:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg49_169

Search NORINE for peptide: strict or relaxed

AMP-binding (469..867): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGCVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

c00050_JADOXQ0.. - Region 1 - terpene

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Location: 95,620 - 117,518 nt. (total: 21,899 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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No matches found.

c00051_JADOXQ0.. - Region 1 - RRE-containing

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Location: 1 - 11,108 nt. (total: 11,108 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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No matches found.

c00051_JADOXQ0.. - Region 2 - epipeptide

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Location: 18,431 - 40,129 nt. (total: 21,699 nt) Show pHMM detection rules used

epipeptide: (TIGR04078 and yydH)

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