GCA_015645615.1 - 7 region(s)

Identified primary metabolite regions

JADOXQ010000001 (original name was: JADOXQ010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	fatty_acids-unassigned	Putative	826,580	879,422

JADOXQ010000002 (original name was: JADOXQ010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	fatty_acids-unassigned	Putative	178,311	203,743	Acetate to butyrate C. sporogenes	BUT	33%
Region 12.2	Nitrate_reductase,Putrescine2spermidine	Aliphatic_amine	634,857	680,915	Nitrate reductase E. coli	NIR	60%
Region 12.3	histidine2glutamate_hutHGIU_operon	Other	853,348	878,759	Histidine to glutamate K. pneumoniae	GLU	60%

JADOXQ010000003 (original name was: JADOXQ010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	fatty_acids-unassigned	Putative	236,816	260,052	Acetate to butyrate C. sporogenes	BUT	50%
Region 23.2	TPP_AA_metabolism,TPP_fatty_acids,Fumarate2succinate	SCFA	619,693	654,107	Acetate to butyrate C. sporogenes	BUT	33%

JADOXQ010000006 (original name was: JADOXQ010000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	hydroxybenzoate2phenol	Aromatic	132,116	154,154	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	fatty_acids-unassigned	Putative	826,580	879,422
Region 12.1	fatty_acids-unassigned	Putative	178,311	203,743	Acetate to butyrate C. sporogenes	BUT	33%
Region 12.2	Nitrate_reductase,Putrescine2spermidine	Aliphatic_amine	634,857	680,915	Nitrate reductase E. coli	NIR	60%
Region 12.3	histidine2glutamate_hutHGIU_operon	Other	853,348	878,759	Histidine to glutamate K. pneumoniae	GLU	60%
Region 23.1	fatty_acids-unassigned	Putative	236,816	260,052	Acetate to butyrate C. sporogenes	BUT	50%
Region 23.2	TPP_AA_metabolism,TPP_fatty_acids,Fumarate2succinate	SCFA	619,693	654,107	Acetate to butyrate C. sporogenes	BUT	33%
Region 49.1	hydroxybenzoate2phenol	Aromatic	132,116	154,154	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

No primary metabolite regions were found in these records:: JADOXQ010000010 (original name was: JADOXQ010000010.1); JADOXQ010000011 (original name was: JADOXQ010000011.1); JADOXQ010000012 (original name was: JADOXQ010000012.1); JADOXQ010000013 (original name was: JADOXQ010000013.1); JADOXQ010000014 (original name was: JADOXQ010000014.1); JADOXQ010000015 (original name was: JADOXQ010000015.1); JADOXQ010000016 (original name was: JADOXQ010000016.1); JADOXQ010000017 (original name was: JADOXQ010000017.1); JADOXQ010000018 (original name was: JADOXQ010000018.1); JADOXQ010000019 (original name was: JADOXQ010000019.1); JADOXQ010000020 (original name was: JADOXQ010000020.1); JADOXQ010000021 (original name was: JADOXQ010000021.1); JADOXQ010000022 (original name was: JADOXQ010000022.1); JADOXQ010000023 (original name was: JADOXQ010000023.1); JADOXQ010000024 (original name was: JADOXQ010000024.1); JADOXQ010000025 (original name was: JADOXQ010000025.1); JADOXQ010000026 (original name was: JADOXQ010000026.1); JADOXQ010000027 (original name was: JADOXQ010000027.1); JADOXQ010000028 (original name was: JADOXQ010000028.1); JADOXQ010000029 (original name was: JADOXQ010000029.1); JADOXQ010000030 (original name was: JADOXQ010000030.1); JADOXQ010000031 (original name was: JADOXQ010000031.1); JADOXQ010000032 (original name was: JADOXQ010000032.1); JADOXQ010000033 (original name was: JADOXQ010000033.1); JADOXQ010000034 (original name was: JADOXQ010000034.1); JADOXQ010000035 (original name was: JADOXQ010000035.1); JADOXQ010000036 (original name was: JADOXQ010000036.1); JADOXQ010000037 (original name was: JADOXQ010000037.1); JADOXQ010000038 (original name was: JADOXQ010000038.1); JADOXQ010000039 (original name was: JADOXQ010000039.1); JADOXQ010000004 (original name was: JADOXQ010000004.1); JADOXQ010000040 (original name was: JADOXQ010000040.1); JADOXQ010000041 (original name was: JADOXQ010000041.1); JADOXQ010000042 (original name was: JADOXQ010000042.1); JADOXQ010000043 (original name was: JADOXQ010000043.1); JADOXQ010000044 (original name was: JADOXQ010000044.1); JADOXQ010000045 (original name was: JADOXQ010000045.1); JADOXQ010000046 (original name was: JADOXQ010000046.1); JADOXQ010000047 (original name was: JADOXQ010000047.1); JADOXQ010000048 (original name was: JADOXQ010000048.1); JADOXQ010000049 (original name was: JADOXQ010000049.1); JADOXQ010000005 (original name was: JADOXQ010000005.1); JADOXQ010000050 (original name was: JADOXQ010000050.1); JADOXQ010000051 (original name was: JADOXQ010000051.1); JADOXQ010000052 (original name was: JADOXQ010000052.1); JADOXQ010000007 (original name was: JADOXQ010000007.1); JADOXQ010000008 (original name was: JADOXQ010000008.1); JADOXQ010000009 (original name was: JADOXQ010000009.1)

Compact view

c00001_JADOXQ0.. - Region 1 - fatty_acids-unassigned

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Location: 826,580 - 879,422 nt. (total: 52,843 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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No matches found.

c00012_JADOXQ0.. - Region 1 - fatty_acids-unassigned

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Location: 178,311 - 203,743 nt. (total: 25,433 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

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transport-related genes

regulatory genes

resistance genes

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electron transport genes

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c00012_JADOXQ0.. - Region 2 - Nitrate_reductase,Putrescine2spermidine

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Location: 634,857 - 680,915 nt. (total: 46,059 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

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c00012_JADOXQ0.. - Region 3 - histidine2glutamate_hutHGIU_operon

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Location: 853,348 - 878,759 nt. (total: 25,412 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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core biosynthetic genes

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c00023_JADOXQ0.. - Region 1 - fatty_acids-unassigned

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Location: 236,816 - 260,052 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00023_JADOXQ0.. - Region 2 - Fumarate2succinate,TPP_AA_metabolism,TPP_fatty_acids

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Location: 619,693 - 654,107 nt. (total: 34,415 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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resistance genes

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c00049_JADOXQ0.. - Region 1 - hydroxybenzoate2phenol

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Location: 132,116 - 154,154 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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