GCA_015668455.1 - 4 region(s)

Identified primary metabolite regions

JADPFP010000011 (original name was: JADPFP010000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	TPP_fatty_acids	Putative	42,903	68,777

JADPFP010000020 (original name was: JADPFP010000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	gallic_acid_met	Aromatic	31,631	49,023	Gallic acid degradation B. sp. KLE	GALL	100%

JADPFP010000021 (original name was: JADPFP010000021.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Pyruvate2acetate-formate	SCFA	18,851	42,101	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JADPFP010000002 (original name was: JADPFP010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_AA_metabolism	Putative	70,274	102,520

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 2.1	TPP_fatty_acids	Putative	42,903	68,777
Region 12.1	gallic_acid_met	Aromatic	31,631	49,023	Gallic acid degradation B. sp. KLE	GALL	100%
Region 13.1	Pyruvate2acetate-formate	SCFA	18,851	42,101	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 22.1	TPP_AA_metabolism	Putative	70,274	102,520

No primary metabolite regions were found in these records:: JADPFP010000010 (original name was: JADPFP010000010.1); JADPFP010000012 (original name was: JADPFP010000012.1); JADPFP010000013 (original name was: JADPFP010000013.1); JADPFP010000014 (original name was: JADPFP010000014.1); JADPFP010000015 (original name was: JADPFP010000015.1); JADPFP010000016 (original name was: JADPFP010000016.1); JADPFP010000017 (original name was: JADPFP010000017.1); JADPFP010000018 (original name was: JADPFP010000018.1); JADPFP010000019 (original name was: JADPFP010000019.1); JADPFP010000001 (original name was: JADPFP010000001.1); JADPFP010000022 (original name was: JADPFP010000022.1); JADPFP010000023 (original name was: JADPFP010000023.1); JADPFP010000024 (original name was: JADPFP010000024.1); JADPFP010000025 (original name was: JADPFP010000025.1); JADPFP010000026 (original name was: JADPFP010000026.1); JADPFP010000027 (original name was: JADPFP010000027.1); JADPFP010000028 (original name was: JADPFP010000028.1); JADPFP010000029 (original name was: JADPFP010000029.1); JADPFP010000030 (original name was: JADPFP010000030.1); JADPFP010000031 (original name was: JADPFP010000031.1); JADPFP010000032 (original name was: JADPFP010000032.1); JADPFP010000033 (original name was: JADPFP010000033.1); JADPFP010000034 (original name was: JADPFP010000034.1); JADPFP010000035 (original name was: JADPFP010000035.1); JADPFP010000036 (original name was: JADPFP010000036.1); JADPFP010000037 (original name was: JADPFP010000037.1); JADPFP010000038 (original name was: JADPFP010000038.1); JADPFP010000039 (original name was: JADPFP010000039.1); JADPFP010000003 (original name was: JADPFP010000003.1); JADPFP010000040 (original name was: JADPFP010000040.1); JADPFP010000041 (original name was: JADPFP010000041.1); JADPFP010000042 (original name was: JADPFP010000042.1); JADPFP010000043 (original name was: JADPFP010000043.1); JADPFP010000044 (original name was: JADPFP010000044.1); JADPFP010000045 (original name was: JADPFP010000045.1); JADPFP010000046 (original name was: JADPFP010000046.1); JADPFP010000047 (original name was: JADPFP010000047.1); JADPFP010000048 (original name was: JADPFP010000048.1); JADPFP010000049 (original name was: JADPFP010000049.1); JADPFP010000004 (original name was: JADPFP010000004.1); JADPFP010000050 (original name was: JADPFP010000050.1); JADPFP010000051 (original name was: JADPFP010000051.1); JADPFP010000052 (original name was: JADPFP010000052.1); JADPFP010000053 (original name was: JADPFP010000053.1); JADPFP010000054 (original name was: JADPFP010000054.1); JADPFP010000055 (original name was: JADPFP010000055.1); JADPFP010000056 (original name was: JADPFP010000056.1); JADPFP010000057 (original name was: JADPFP010000057.1); JADPFP010000058 (original name was: JADPFP010000058.1); JADPFP010000059 (original name was: JADPFP010000059.1); JADPFP010000005 (original name was: JADPFP010000005.1); JADPFP010000060 (original name was: JADPFP010000060.1); JADPFP010000061 (original name was: JADPFP010000061.1); JADPFP010000062 (original name was: JADPFP010000062.1); JADPFP010000063 (original name was: JADPFP010000063.1); JADPFP010000064 (original name was: JADPFP010000064.1); JADPFP010000065 (original name was: JADPFP010000065.1); JADPFP010000066 (original name was: JADPFP010000066.1); JADPFP010000067 (original name was: JADPFP010000067.1); JADPFP010000068 (original name was: JADPFP010000068.1); JADPFP010000069 (original name was: JADPFP010000069.1); JADPFP010000006 (original name was: JADPFP010000006.1); JADPFP010000070 (original name was: JADPFP010000070.1); JADPFP010000071 (original name was: JADPFP010000071.1); JADPFP010000007 (original name was: JADPFP010000007.1); JADPFP010000008 (original name was: JADPFP010000008.1); JADPFP010000009 (original name was: JADPFP010000009.1)

Compact view

c00002_JADPFP0.. - Region 1 - TPP_fatty_acids

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Location: 42,903 - 68,777 nt. (total: 25,875 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00012_JADPFP0.. - Region 1 - gallic_acid_met

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Location: 31,631 - 49,023 nt. (total: 17,393 nt) Show pHMM detection rules used

Region on contig edge.

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00013_JADPFP0.. - Region 1 - Pyruvate2acetate-formate

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Location: 18,851 - 42,101 nt. (total: 23,251 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00022_JADPFP0.. - Region 1 - TPP_AA_metabolism

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Location: 70,274 - 102,520 nt. (total: 32,247 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.