GCA_015669695.1 - 3 region(s)

Identified primary metabolite regions

JADPAP010000001 (original name was: JADPAP010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Pyruvate2acetate-formate	SCFA	75,269	98,645	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JADPAP010000002 (original name was: JADPAP010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Fumarate2succinate	SCFA	296,754	319,598	Fumarate2succinate suc dh E. coli	SUC	100%

JADPAP010000005 (original name was: JADPAP010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Others_HGD_unassigned	Putative	123,707	148,429

No primary metabolite regions were found in these records:: JADPAP010000010 (original name was: JADPAP010000010.1); JADPAP010000011 (original name was: JADPAP010000011.1); JADPAP010000012 (original name was: JADPAP010000012.1); JADPAP010000013 (original name was: JADPAP010000013.1); JADPAP010000014 (original name was: JADPAP010000014.1); JADPAP010000015 (original name was: JADPAP010000015.1); JADPAP010000016 (original name was: JADPAP010000016.1); JADPAP010000017 (original name was: JADPAP010000017.1); JADPAP010000018 (original name was: JADPAP010000018.1); JADPAP010000019 (original name was: JADPAP010000019.1); JADPAP010000020 (original name was: JADPAP010000020.1); JADPAP010000003 (original name was: JADPAP010000003.1); JADPAP010000021 (original name was: JADPAP010000021.1); JADPAP010000022 (original name was: JADPAP010000022.1); JADPAP010000004 (original name was: JADPAP010000004.1); JADPAP010000023 (original name was: JADPAP010000023.1); JADPAP010000024 (original name was: JADPAP010000024.1); JADPAP010000025 (original name was: JADPAP010000025.1); JADPAP010000026 (original name was: JADPAP010000026.1); JADPAP010000006 (original name was: JADPAP010000006.1); JADPAP010000027 (original name was: JADPAP010000027.1); JADPAP010000028 (original name was: JADPAP010000028.1); JADPAP010000007 (original name was: JADPAP010000007.1); JADPAP010000008 (original name was: JADPAP010000008.1); JADPAP010000009 (original name was: JADPAP010000009.1)

Compact view

c00010_JADPAP0.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 75,269 - 98,645 nt. (total: 23,377 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00012_JADPAP0.. - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 296,754 - 319,598 nt. (total: 22,845 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00019_JADPAP0.. - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 123,707 - 148,429 nt. (total: 24,723 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.