GCA_015844655.1 - 6 region(s)

Identified primary metabolite regions

LDGA01000054.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 47.1	Nitrate_reductase,Putrescine2spermidine	Aliphatic_amine	147,602	193,646	Nitrate reductase E. coli	NIR	60%

LDGA01000070.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 63.1	Fumarate2succinate	SCFA	82,152	104,676	Acetate to butyrate C. sporogenes	BUT	33%

LDGA01000073.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 66.1	fatty_acids-unassigned	Putative	9,874	33,110	Acetate to butyrate C. sporogenes	BUT	50%

LDGA01000076.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 69.1	TPP_AA_metabolism	Putative	100,729	117,802

LDGA01000085.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 78.1	hydroxybenzoate2phenol	Aromatic	7,102	29,140	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

LDGA01000099.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 92.1	fatty_acids-unassigned	Putative	87,582	113,017	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: LDGA01000004.1; LDGA01000006.1; LDGA01000007.1; LDGA01000008.1; LDGA01000009.1; LDGA01000010.1; LDGA01000011.1; LDGA01000012.1; LDGA01000015.1; LDGA01000016.1; LDGA01000017.1; LDGA01000018.1; LDGA01000019.1; LDGA01000020.1; LDGA01000021.1; LDGA01000022.1; LDGA01000023.1; LDGA01000024.1; LDGA01000025.1; LDGA01000026.1; LDGA01000027.1; LDGA01000028.1; LDGA01000029.1; LDGA01000030.1; LDGA01000031.1; LDGA01000032.1; LDGA01000033.1; LDGA01000034.1; LDGA01000035.1; LDGA01000036.1; LDGA01000037.1; LDGA01000038.1; LDGA01000039.1; LDGA01000040.1; LDGA01000041.1; LDGA01000042.1; LDGA01000043.1; LDGA01000045.1; LDGA01000046.1; LDGA01000047.1; LDGA01000048.1; LDGA01000049.1; LDGA01000050.1; LDGA01000051.1; LDGA01000052.1; LDGA01000053.1; LDGA01000055.1; LDGA01000056.1; LDGA01000057.1; LDGA01000058.1; LDGA01000059.1; LDGA01000060.1; LDGA01000061.1; LDGA01000062.1; LDGA01000063.1; LDGA01000064.1; LDGA01000065.1; LDGA01000066.1; LDGA01000067.1; LDGA01000068.1; LDGA01000069.1; LDGA01000071.1; LDGA01000072.1; LDGA01000074.1; LDGA01000075.1; LDGA01000077.1; LDGA01000078.1; LDGA01000079.1; LDGA01000080.1; LDGA01000081.1; LDGA01000082.1; LDGA01000083.1; LDGA01000084.1; LDGA01000086.1; LDGA01000087.1; LDGA01000088.1; LDGA01000089.1; LDGA01000090.1; LDGA01000091.1; LDGA01000092.1; LDGA01000093.1; LDGA01000094.1; LDGA01000095.1; LDGA01000096.1; LDGA01000097.1; LDGA01000098.1; LDGA01000100.1

Compact view

LDGA01000054.1 - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 147,602 - 193,646 nt. (total: 46,045 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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LDGA01000070.1 - Region 1 - Fumarate2succinate

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Location: 82,152 - 104,676 nt. (total: 22,525 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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LDGA01000073.1 - Region 1 - fatty_acids-unassigned

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Location: 9,874 - 33,110 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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LDGA01000076.1 - Region 1 - TPP_AA_metabolism

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Location: 100,729 - 117,802 nt. (total: 17,074 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

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No matches found.

LDGA01000085.1 - Region 1 - hydroxybenzoate2phenol

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Location: 7,102 - 29,140 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

Legend:

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LDGA01000099.1 - Region 1 - fatty_acids-unassigned

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Location: 87,582 - 113,017 nt. (total: 25,436 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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