GCA_016887785.1 - 3 region(s)

Identified primary metabolite regions

JAFEHM010000017 (original name was: JAFEHM010000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	TPP_AA_metabolism	Putative	31,785	63,921

JAFEHM010000037 (original name was: JAFEHM010000037.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	TPP_fatty_acids	Putative	1	13,184

JAFEHM010000004 (original name was: JAFEHM010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 51.1	Pyruvate2acetate-formate	SCFA	130,766	154,010	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 15.1	TPP_AA_metabolism	Putative	31,785	63,921
Region 37.1	TPP_fatty_acids	Putative	1	13,184
Region 51.1	Pyruvate2acetate-formate	SCFA	130,766	154,010	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: JAFEHM010000100 (original name was: JAFEHM010000100.1); JAFEHM010000101 (original name was: JAFEHM010000101.1); JAFEHM010000102 (original name was: JAFEHM010000102.1); JAFEHM010000103 (original name was: JAFEHM010000103.1); JAFEHM010000104 (original name was: JAFEHM010000104.1); JAFEHM010000105 (original name was: JAFEHM010000105.1); JAFEHM010000106 (original name was: JAFEHM010000106.1); JAFEHM010000010 (original name was: JAFEHM010000010.1); JAFEHM010000011 (original name was: JAFEHM010000011.1); JAFEHM010000012 (original name was: JAFEHM010000012.1); JAFEHM010000013 (original name was: JAFEHM010000013.1); JAFEHM010000014 (original name was: JAFEHM010000014.1); JAFEHM010000015 (original name was: JAFEHM010000015.1); JAFEHM010000016 (original name was: JAFEHM010000016.1); JAFEHM010000018 (original name was: JAFEHM010000018.1); JAFEHM010000019 (original name was: JAFEHM010000019.1); JAFEHM010000001 (original name was: JAFEHM010000001.1); JAFEHM010000020 (original name was: JAFEHM010000020.1); JAFEHM010000021 (original name was: JAFEHM010000021.1); JAFEHM010000022 (original name was: JAFEHM010000022.1); JAFEHM010000023 (original name was: JAFEHM010000023.1); JAFEHM010000024 (original name was: JAFEHM010000024.1); JAFEHM010000025 (original name was: JAFEHM010000025.1); JAFEHM010000026 (original name was: JAFEHM010000026.1); JAFEHM010000027 (original name was: JAFEHM010000027.1); JAFEHM010000028 (original name was: JAFEHM010000028.1); JAFEHM010000029 (original name was: JAFEHM010000029.1); JAFEHM010000002 (original name was: JAFEHM010000002.1); JAFEHM010000030 (original name was: JAFEHM010000030.1); JAFEHM010000031 (original name was: JAFEHM010000031.1); JAFEHM010000032 (original name was: JAFEHM010000032.1); JAFEHM010000033 (original name was: JAFEHM010000033.1); JAFEHM010000034 (original name was: JAFEHM010000034.1); JAFEHM010000035 (original name was: JAFEHM010000035.1); JAFEHM010000036 (original name was: JAFEHM010000036.1); JAFEHM010000038 (original name was: JAFEHM010000038.1); JAFEHM010000039 (original name was: JAFEHM010000039.1); JAFEHM010000003 (original name was: JAFEHM010000003.1); JAFEHM010000040 (original name was: JAFEHM010000040.1); JAFEHM010000041 (original name was: JAFEHM010000041.1); JAFEHM010000042 (original name was: JAFEHM010000042.1); JAFEHM010000043 (original name was: JAFEHM010000043.1); JAFEHM010000044 (original name was: JAFEHM010000044.1); JAFEHM010000045 (original name was: JAFEHM010000045.1); JAFEHM010000046 (original name was: JAFEHM010000046.1); JAFEHM010000047 (original name was: JAFEHM010000047.1); JAFEHM010000048 (original name was: JAFEHM010000048.1); JAFEHM010000049 (original name was: JAFEHM010000049.1); JAFEHM010000050 (original name was: JAFEHM010000050.1); JAFEHM010000051 (original name was: JAFEHM010000051.1); JAFEHM010000052 (original name was: JAFEHM010000052.1); JAFEHM010000053 (original name was: JAFEHM010000053.1); JAFEHM010000054 (original name was: JAFEHM010000054.1); JAFEHM010000055 (original name was: JAFEHM010000055.1); JAFEHM010000056 (original name was: JAFEHM010000056.1); JAFEHM010000057 (original name was: JAFEHM010000057.1); JAFEHM010000058 (original name was: JAFEHM010000058.1); JAFEHM010000059 (original name was: JAFEHM010000059.1); JAFEHM010000005 (original name was: JAFEHM010000005.1); JAFEHM010000060 (original name was: JAFEHM010000060.1); JAFEHM010000061 (original name was: JAFEHM010000061.1); JAFEHM010000062 (original name was: JAFEHM010000062.1); JAFEHM010000063 (original name was: JAFEHM010000063.1); JAFEHM010000064 (original name was: JAFEHM010000064.1); JAFEHM010000065 (original name was: JAFEHM010000065.1); JAFEHM010000066 (original name was: JAFEHM010000066.1); JAFEHM010000067 (original name was: JAFEHM010000067.1); JAFEHM010000068 (original name was: JAFEHM010000068.1); JAFEHM010000069 (original name was: JAFEHM010000069.1); JAFEHM010000006 (original name was: JAFEHM010000006.1); JAFEHM010000070 (original name was: JAFEHM010000070.1); JAFEHM010000071 (original name was: JAFEHM010000071.1); JAFEHM010000072 (original name was: JAFEHM010000072.1); JAFEHM010000073 (original name was: JAFEHM010000073.1); JAFEHM010000074 (original name was: JAFEHM010000074.1); JAFEHM010000075 (original name was: JAFEHM010000075.1); JAFEHM010000076 (original name was: JAFEHM010000076.1); JAFEHM010000077 (original name was: JAFEHM010000077.1); JAFEHM010000078 (original name was: JAFEHM010000078.1); JAFEHM010000079 (original name was: JAFEHM010000079.1); JAFEHM010000007 (original name was: JAFEHM010000007.1); JAFEHM010000080 (original name was: JAFEHM010000080.1); JAFEHM010000081 (original name was: JAFEHM010000081.1); JAFEHM010000082 (original name was: JAFEHM010000082.1); JAFEHM010000083 (original name was: JAFEHM010000083.1); JAFEHM010000084 (original name was: JAFEHM010000084.1); JAFEHM010000085 (original name was: JAFEHM010000085.1); JAFEHM010000086 (original name was: JAFEHM010000086.1); JAFEHM010000087 (original name was: JAFEHM010000087.1); JAFEHM010000088 (original name was: JAFEHM010000088.1); JAFEHM010000089 (original name was: JAFEHM010000089.1); JAFEHM010000008 (original name was: JAFEHM010000008.1); JAFEHM010000090 (original name was: JAFEHM010000090.1); JAFEHM010000091 (original name was: JAFEHM010000091.1); JAFEHM010000092 (original name was: JAFEHM010000092.1); JAFEHM010000093 (original name was: JAFEHM010000093.1); JAFEHM010000094 (original name was: JAFEHM010000094.1); JAFEHM010000095 (original name was: JAFEHM010000095.1); JAFEHM010000096 (original name was: JAFEHM010000096.1); JAFEHM010000097 (original name was: JAFEHM010000097.1); JAFEHM010000098 (original name was: JAFEHM010000098.1); JAFEHM010000099 (original name was: JAFEHM010000099.1); JAFEHM010000009 (original name was: JAFEHM010000009.1)

Compact view

c00015_JAFEHM0.. - Region 1 - TPP_AA_metabolism

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Location: 31,785 - 63,921 nt. (total: 32,137 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00037_JAFEHM0.. - Region 1 - TPP_fatty_acids

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Location: 1 - 13,184 nt. (total: 13,184 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00051_JAFEHM0.. - Region 1 - Pyruvate2acetate-formate

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Location: 130,766 - 154,010 nt. (total: 23,245 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters