GCA_016887825.1 - 3 region(s)

Identified primary metabolite regions

JAFEHJ010000011 (original name was: JAFEHJ010000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Pyruvate2acetate-formate	SCFA	21,000	44,250	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAFEHJ010000001 (original name was: JAFEHJ010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	TPP_fatty_acids	Putative	210,147	236,073

JAFEHJ010000004 (original name was: JAFEHJ010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	TPP_AA_metabolism	Putative	3,020	34,769

No primary metabolite regions were found in these records:: JAFEHJ010000010 (original name was: JAFEHJ010000010.1); JAFEHJ010000012 (original name was: JAFEHJ010000012.1); JAFEHJ010000013 (original name was: JAFEHJ010000013.1); JAFEHJ010000014 (original name was: JAFEHJ010000014.1); JAFEHJ010000015 (original name was: JAFEHJ010000015.1); JAFEHJ010000016 (original name was: JAFEHJ010000016.1); JAFEHJ010000017 (original name was: JAFEHJ010000017.1); JAFEHJ010000018 (original name was: JAFEHJ010000018.1); JAFEHJ010000019 (original name was: JAFEHJ010000019.1); JAFEHJ010000020 (original name was: JAFEHJ010000020.1); JAFEHJ010000021 (original name was: JAFEHJ010000021.1); JAFEHJ010000022 (original name was: JAFEHJ010000022.1); JAFEHJ010000023 (original name was: JAFEHJ010000023.1); JAFEHJ010000024 (original name was: JAFEHJ010000024.1); JAFEHJ010000025 (original name was: JAFEHJ010000025.1); JAFEHJ010000026 (original name was: JAFEHJ010000026.1); JAFEHJ010000027 (original name was: JAFEHJ010000027.1); JAFEHJ010000028 (original name was: JAFEHJ010000028.1); JAFEHJ010000029 (original name was: JAFEHJ010000029.1); JAFEHJ010000002 (original name was: JAFEHJ010000002.1); JAFEHJ010000030 (original name was: JAFEHJ010000030.1); JAFEHJ010000031 (original name was: JAFEHJ010000031.1); JAFEHJ010000032 (original name was: JAFEHJ010000032.1); JAFEHJ010000033 (original name was: JAFEHJ010000033.1); JAFEHJ010000034 (original name was: JAFEHJ010000034.1); JAFEHJ010000035 (original name was: JAFEHJ010000035.1); JAFEHJ010000036 (original name was: JAFEHJ010000036.1); JAFEHJ010000037 (original name was: JAFEHJ010000037.1); JAFEHJ010000038 (original name was: JAFEHJ010000038.1); JAFEHJ010000039 (original name was: JAFEHJ010000039.1); JAFEHJ010000003 (original name was: JAFEHJ010000003.1); JAFEHJ010000040 (original name was: JAFEHJ010000040.1); JAFEHJ010000041 (original name was: JAFEHJ010000041.1); JAFEHJ010000042 (original name was: JAFEHJ010000042.1); JAFEHJ010000043 (original name was: JAFEHJ010000043.1); JAFEHJ010000044 (original name was: JAFEHJ010000044.1); JAFEHJ010000045 (original name was: JAFEHJ010000045.1); JAFEHJ010000046 (original name was: JAFEHJ010000046.1); JAFEHJ010000047 (original name was: JAFEHJ010000047.1); JAFEHJ010000048 (original name was: JAFEHJ010000048.1); JAFEHJ010000049 (original name was: JAFEHJ010000049.1); JAFEHJ010000050 (original name was: JAFEHJ010000050.1); JAFEHJ010000051 (original name was: JAFEHJ010000051.1); JAFEHJ010000052 (original name was: JAFEHJ010000052.1); JAFEHJ010000053 (original name was: JAFEHJ010000053.1); JAFEHJ010000054 (original name was: JAFEHJ010000054.1); JAFEHJ010000055 (original name was: JAFEHJ010000055.1); JAFEHJ010000056 (original name was: JAFEHJ010000056.1); JAFEHJ010000057 (original name was: JAFEHJ010000057.1); JAFEHJ010000058 (original name was: JAFEHJ010000058.1); JAFEHJ010000059 (original name was: JAFEHJ010000059.1); JAFEHJ010000005 (original name was: JAFEHJ010000005.1); JAFEHJ010000060 (original name was: JAFEHJ010000060.1); JAFEHJ010000061 (original name was: JAFEHJ010000061.1); JAFEHJ010000062 (original name was: JAFEHJ010000062.1); JAFEHJ010000063 (original name was: JAFEHJ010000063.1); JAFEHJ010000064 (original name was: JAFEHJ010000064.1); JAFEHJ010000065 (original name was: JAFEHJ010000065.1); JAFEHJ010000066 (original name was: JAFEHJ010000066.1); JAFEHJ010000067 (original name was: JAFEHJ010000067.1); JAFEHJ010000068 (original name was: JAFEHJ010000068.1); JAFEHJ010000069 (original name was: JAFEHJ010000069.1); JAFEHJ010000006 (original name was: JAFEHJ010000006.1); JAFEHJ010000070 (original name was: JAFEHJ010000070.1); JAFEHJ010000071 (original name was: JAFEHJ010000071.1); JAFEHJ010000072 (original name was: JAFEHJ010000072.1); JAFEHJ010000007 (original name was: JAFEHJ010000007.1); JAFEHJ010000008 (original name was: JAFEHJ010000008.1); JAFEHJ010000009 (original name was: JAFEHJ010000009.1)

Compact view

c00002_JAFEHJ0.. - Region 1 - Pyruvate2acetate-formate

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Location: 21,000 - 44,250 nt. (total: 23,251 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00011_JAFEHJ0.. - Region 1 - TPP_fatty_acids

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Location: 210,147 - 236,073 nt. (total: 25,927 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00044_JAFEHJ0.. - Region 1 - TPP_AA_metabolism

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Location: 3,020 - 34,769 nt. (total: 31,750 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.