GCA_016887865.1 - 4 region(s)

Identified primary metabolite regions

JAFEHI010000001 (original name was: JAFEHI010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	OD_fatty_acids	Putative	26,216	51,655
Region 11.2	Pyruvate2acetate-formate	SCFA	417,416	438,935	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAFEHI010000002 (original name was: JAFEHI010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	gallic_acid_met	Aromatic	182,167	204,224	Gallic acid degradation B. sp. KLE	GALL	100%

JAFEHI010000008 (original name was: JAFEHI010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 52.1	TPP_AA_metabolism	Putative	14,418	46,546

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 11.1	OD_fatty_acids	Putative	26,216	51,655
Region 11.2	Pyruvate2acetate-formate	SCFA	417,416	438,935	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 22.1	gallic_acid_met	Aromatic	182,167	204,224	Gallic acid degradation B. sp. KLE	GALL	100%
Region 52.1	TPP_AA_metabolism	Putative	14,418	46,546

No primary metabolite regions were found in these records:: JAFEHI010000010 (original name was: JAFEHI010000010.1); JAFEHI010000011 (original name was: JAFEHI010000011.1); JAFEHI010000012 (original name was: JAFEHI010000012.1); JAFEHI010000013 (original name was: JAFEHI010000013.1); JAFEHI010000014 (original name was: JAFEHI010000014.1); JAFEHI010000015 (original name was: JAFEHI010000015.1); JAFEHI010000016 (original name was: JAFEHI010000016.1); JAFEHI010000017 (original name was: JAFEHI010000017.1); JAFEHI010000018 (original name was: JAFEHI010000018.1); JAFEHI010000019 (original name was: JAFEHI010000019.1); JAFEHI010000020 (original name was: JAFEHI010000020.1); JAFEHI010000021 (original name was: JAFEHI010000021.1); JAFEHI010000022 (original name was: JAFEHI010000022.1); JAFEHI010000023 (original name was: JAFEHI010000023.1); JAFEHI010000024 (original name was: JAFEHI010000024.1); JAFEHI010000025 (original name was: JAFEHI010000025.1); JAFEHI010000026 (original name was: JAFEHI010000026.1); JAFEHI010000027 (original name was: JAFEHI010000027.1); JAFEHI010000028 (original name was: JAFEHI010000028.1); JAFEHI010000029 (original name was: JAFEHI010000029.1); JAFEHI010000030 (original name was: JAFEHI010000030.1); JAFEHI010000031 (original name was: JAFEHI010000031.1); JAFEHI010000032 (original name was: JAFEHI010000032.1); JAFEHI010000033 (original name was: JAFEHI010000033.1); JAFEHI010000034 (original name was: JAFEHI010000034.1); JAFEHI010000035 (original name was: JAFEHI010000035.1); JAFEHI010000036 (original name was: JAFEHI010000036.1); JAFEHI010000037 (original name was: JAFEHI010000037.1); JAFEHI010000038 (original name was: JAFEHI010000038.1); JAFEHI010000039 (original name was: JAFEHI010000039.1); JAFEHI010000003 (original name was: JAFEHI010000003.1); JAFEHI010000040 (original name was: JAFEHI010000040.1); JAFEHI010000041 (original name was: JAFEHI010000041.1); JAFEHI010000042 (original name was: JAFEHI010000042.1); JAFEHI010000043 (original name was: JAFEHI010000043.1); JAFEHI010000044 (original name was: JAFEHI010000044.1); JAFEHI010000045 (original name was: JAFEHI010000045.1); JAFEHI010000046 (original name was: JAFEHI010000046.1); JAFEHI010000047 (original name was: JAFEHI010000047.1); JAFEHI010000048 (original name was: JAFEHI010000048.1); JAFEHI010000049 (original name was: JAFEHI010000049.1); JAFEHI010000004 (original name was: JAFEHI010000004.1); JAFEHI010000050 (original name was: JAFEHI010000050.1); JAFEHI010000051 (original name was: JAFEHI010000051.1); JAFEHI010000052 (original name was: JAFEHI010000052.1); JAFEHI010000053 (original name was: JAFEHI010000053.1); JAFEHI010000005 (original name was: JAFEHI010000005.1); JAFEHI010000006 (original name was: JAFEHI010000006.1); JAFEHI010000007 (original name was: JAFEHI010000007.1); JAFEHI010000009 (original name was: JAFEHI010000009.1)

Compact view

c00011_JAFEHI0.. - Region 1 - OD_fatty_acids

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Location: 26,216 - 51,655 nt. (total: 25,440 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00011_JAFEHI0.. - Region 2 - Pyruvate2acetate-formate

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Location: 417,416 - 438,935 nt. (total: 21,520 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00022_JAFEHI0.. - Region 1 - gallic_acid_met

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Location: 182,167 - 204,224 nt. (total: 22,058 nt) Show pHMM detection rules used

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00052_JAFEHI0.. - Region 1 - TPP_AA_metabolism

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Location: 14,418 - 46,546 nt. (total: 32,129 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.