LOCUS       c00056_JAFELK0..        5468 bp    DNA     linear   UNK 01-JAN-1980
DEFINITION  JAFELK010000006.1 Lacticaseibacillus paracasei strain YT170
            Scaffold6, whole genome shotgun sequence.
ACCESSION   JAFELK010000006
VERSION     JAFELK010000006
KEYWORDS    .
SOURCE      
  ORGANISM  
            .
COMMENT     ##antiSMASH-Data-START##
            Version      :: 6.0.0
            Run date     :: 2022-06-19 22:26:53
            Original ID  :: JAFELK010000006.1
            NOTE: This is a single cluster extracted from a larger record!
            Orig. start  :: 0
            Orig. end    :: 5468
            ##antiSMASH-Data-END##
FEATURES             Location/Qualifiers
     protocluster    1..5468
                     /aStool="rule-based-clusters"
                     /contig_edge="True"
                     /core_location="[37:468]"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193)"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
                     /tool="antismash"
     proto_core      38..468
                     /aStool="rule-based-clusters"
                     /tool="antismash"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193)"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
     cand_cluster    1..5468
                     /candidate_cluster_number="1"
                     /contig_edge="True"
                     /detection_rules="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193)"
                     /kind="single"
                     /product="RiPP-like"
                     /protoclusters="1"
                     /tool="antismash"
     region          1..5468
                     /candidate_cluster_numbers="1"
                     /contig_edge="True"
                     /product="RiPP-like"
                     /region_number="1"
                     /rules="(strepbact or Antimicrobial14 or Bacteriocin_IId or
                     BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or
                     Lactococcin or Antimicrobial17 or Lactococcin_972 or
                     Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or
                     TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or
                     TIGR03975 or DUF692 or TIGR01193)"
                     /tool="antismash"
     CDS             complement(38..238)
                     /gene_functions="biosynthetic (rule-based-clusters)
                     RiPP-like: Bacteriocin_IIc"
                     /gene_kind="biosynthetic"
                     /locus_tag="ctg56_1"
                     /sec_met_domain="Bacteriocin_IIc (E-value: 9.4e-09,
                     bitscore: 28.4, seeds: 35, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MISKEVGITLKQHDLVLIQGGAKRRNKPSGCIVSTIGGAVAGAAG
                     LNPFTTVAGAAIGLSLCLSTN"
     CDS             complement(235..468)
                     /gene_functions="biosynthetic (rule-based-clusters)
                     RiPP-like: Bacteriocin_IIc"
                     /gene_kind="biosynthetic"
                     /locus_tag="ctg56_2"
                     /sec_met_domain="Bacteriocin_IIc (E-value: 1.2e-14,
                     bitscore: 47.3, seeds: 35, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MSYNYRQLDDFQLSGVSGGKKKFDCAATFVTGITAGIGSGTITGL
                     AGGPFGIIGGAVVGGNLGAVGSAIKCLGDGMQ"
     CDS             complement(740..1693)
                     /gene_functions="biosynthetic-additional (smcogs)
                     SMCOG1039:aldo/keto reductase family oxidoreductase (Score:
                     221.6; E-value: 2.1e-67)"
                     /gene_kind="biosynthetic-additional"
                     /locus_tag="ctg56_3"
                     /transl_table=11
                     /translation="MKQVRLGGSNWQASSVALGIMRMNVLAPDKAANVLDSAYNDGINF
                     IDSADIYGQGKSEEVFGEALKQASVSRDQLFIQSKVGIVVDPKRSHGSLVFGKRYDFSK
                     DHLLSAVDHILKRLQVDYLDSVLLHRPDPLMEVDDVAAAFDALEQSGKVRHFGVSNFNP
                     EQIALLESGIRQPLLIDQVQFSVAHTGMVNAGMHTNMADAASVDHDGSLLPYLQRKHMT
                     LQAWSPFQYGMFEGTFIDSPKFKALNDELQKVADHYHTNKNAIAVAWLLRHPVGVQVIL
                     GSMNPEHIKESAEGADSTLTRQEWYDIYFAAGNDLP"
     CDS             1898..2632
                     /NRPS_PKS="Domain: PKS_KR (6-169). E-value: 3.6e-12. Score:
                     38.3. Matches aSDomain: nrpspksdomains_ctg56_4_PKS_KR.1"
                     /NRPS_PKS="type: other"
                     /gene_functions="biosynthetic-additional
                     (rule-based-clusters) adh_short"
                     /gene_functions="biosynthetic-additional (smcogs)
                     SMCOG1001:short-chain dehydrogenase/reductase SDR (Score:
                     192.9; E-value: 1.1e-58)"
                     /gene_kind="biosynthetic-additional"
                     /locus_tag="ctg56_4"
                     /sec_met_domain="adh_short (E-value: 2.5e-34, bitscore:
                     111.6, seeds: 230, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="LTVKDKVVVITGASSGIGAATVQVLAEAGAKLVIGARRTERLAEL
                     AASFTDGQVLYQQTDVTDQQQVKALIDLALDKFGHVDVLYNNAGLMPLSEMAELKVNEW
                     ERMIDVNIKGVLYGIAAVLPPMIAQHSGQIITTDSVAGHIVHPGTAVYSGTKWAIQAIM
                     DGLRQEQAANHIKTTMISPGAVNTELFSTITDPKRREAVEADEKNNGLSASDVAKAVLY
                     AIDQPANVAINEVLLRPVTQER"
     aSDomain        1916..2404
                     /aSDomain="PKS_KR"
                     /aSTool="nrps_pks_domains"
                     /database="nrpspksdomains.hmm"
                     /detection="hmmscan"
                     /domain_id="nrpspksdomains_ctg56_4_PKS_KR.1"
                     /evalue="3.60E-12"
                     /label="ctg56_4_PKS_KR.1"
                     /locus_tag="ctg56_4"
                     /protein_end="169"
                     /protein_start="6"
                     /score="38.3"
                     /specificity="KR activity: inactive"
                     /specificity="KR stereochemistry: C2"
                     /tool="antismash"
                     /translation="VVVITGASSGIGAATVQVLAEAGAKLVIGARRTERLAELAASFTD
                     GQVLYQQTDVTDQQQVKALIDLALDKFGHVDVLYNNAGLMPLSEMAELKVNEWERMIDV
                     NIKGVLYGIAAVLPPMIAQHSGQIITTDSVAGHIVHPGTAVYSGTKWAIQAIMDGLRQE
                     "
     aSModule        1916..2404
                     /domains="nrpspksdomains_ctg56_4_PKS_KR.1"
                     /incomplete
                     /locus_tags="ctg56_4"
                     /tool="antismash"
                     /type="pks"
     CDS_motif       1919..1999
                     /aSTool="nrps_pks_domains"
                     /database="abmotifs"
                     /detection="hmmscan"
                     /domain_id="nrpspksmotif_ctg56_4_0001"
                     /evalue="1.90E-04"
                     /label="PKSI-KR_m1"
                     /locus_tag="ctg56_4"
                     /protein_end="34"
                     /protein_start="7"
                     /score="14.1"
                     /tool="antismash"
                     /translation="VVITGASSGIGAATVQVLAEAGAKLVI"
     CDS             2658..3821
                     /gene_functions="biosynthetic-additional (smcogs)
                     SMCOG1217:NADH:flavin oxidoreductase/NADH oxidase (Score:
                     289.8; E-value: 4.6e-88)"
                     /gene_kind="biosynthetic-additional"
                     /locus_tag="ctg56_5"
                     /transl_table=11
                     /translation="MSGYHFLKPFTFKHQTITLKNRIVIPPMTTRLSFEDGTVTRDEIR
                     YYQQRAGGVGMFITGTANVNALGKGFEGELSVADDRFIPGLSKLAAAMKTGGTKAILQI
                     FSAGRMSNSKILRGEQPVSASAVAAPRAGYETPRALTPAEIEATIHDFGQAVRRAILAG
                     FDGIELHGANTYLIQQFYSPNSNRRTDEWGGDRDKRMRFPLAVVHEAEKMIATIADRPF
                     LLGYRISPEELEQPGITLDDTLALIAALKQTKIDYLHVSQSDVWRTSLRNPEDTAIMNE
                     QIRNHVAGAFPVIVVGGIKTPADAEKAAESFDLVAIGHEMIREPHWVQKVLDHDEKAIR
                     FQIAPADLEELGIAPTFLDFIESISGGAKGVPLTTAQSVTSSNVTQD"
     CDS             complement(4083..5459)
                     /locus_tag="ctg56_6"
                     /transl_table=11
                     /translation="MSKYRTETDTLGPVEIPANALWGPQTERSRHNFQAGPLMPMPVIR
                     ALLQLKKAAARANVAADVLPAPKGQLITRAVDALLALPDEKLQKDFPLHVYQTGSGTQT
                     NMNVNEVISHQAAKLNPDLPILPNDDVNHSQSSNDTFPTVMNITSAIAVNQLLHAVNQL
                     CSVLYSKAVTYARVVKIGRTHLQDATPLTFGQEISGWVAMMEHDQIALKRLQPNLFYLA
                     IGGTAVGTGLNADPNFGKIVAGRLSDVYQLPLSAKTNKFAALAAHSEISVVHGAIKTLA
                     ADLLKIANDIRFLASGPRAGYGELRIPANEPGSSIMPGKVNPTQAEALTMAAVRVMGND
                     TTITVAASQGNFELNVYKPVIISTFLESADLLTKTVTSFTEKLAAGLTIHAPHMRALVD
                     HSLMLVTALAPHIGYEKSAAIAQLAEQENLDLKAAAIKSGDVTAAQFDKWVDPLKMTRA
                     "
ORIGIN
        1 tttcaggtag ccggaatgtt gcctaattca ccagccacta attagtgctg agacacaagg
       61 ataatcctat tgcagcgcct gcaacagttg taaatggatt taatccagct gcccctgcta
      121 ccgctccccc gatcgtggac acaatacacc cactaggttt attgcgtcgc ttggctcctc
      181 cttggattaa gaccaaatca tgctgtttta aagtaatgcc cacttcttta cttatcattg
      241 catcccatct cctaagcatt taatagctga cccaaccgct cctaagtttc caccaactac
      301 ggcgccgccg attatcccaa aaggaccacc agctaggcca gtaatcgttc ctgatccaat
      361 acctgccgtg atgccagtaa caaatgtagc agcacaatca aatttctttt tcccacctga
      421 aacccctgac aactgaaaat cgtcgagctg gcgataatta taagacataa ttttcctttt
      481 ttcttcaaaa ggcaacaagt tattttgtgt aaggtcgact ttactgtctt taacatacat
      541 taattatttg tgtaaaatgc caaaattttt taaacgtagg aaatttccag tttaacgtcg
      601 tctttacact tttattgttc agttgcgctt taaaagtcaa aaattcttaa cgtttaaatc
      661 tccttgcttg gtaaaaactt caattttttg caaaaaaaat cgtctcagca atttgagaca
      721 attttttcat atcatcaact tacggcaaat cattccccgc cgcaaagtaa atgtcatacc
      781 attcttgtcg ggtcaacgtg ctgtccgcgc cttccgcact ttccttgata tgttcaggat
      841 tcatagagcc gagaatcacc tgcacaccaa ctggatggcg taatagccaa gcgactgcga
      901 ttgcattttt attggtgtgg tagtggtcag cgactttctg cagttcatca ttcaacgcct
      961 taaacttcgg gctatcgata aaggtgcctt caaacatgcc gtattggaat ggtgaccatg
     1021 cttgtaaggt catgtgtttg cgttgtaagt atggtaatag gctgccatca tgatcgaccg
     1081 aggcagcgtc ggccatgttg gtgtgcatcc ccgcattgac catgccagta tgggcaacgg
     1141 agaattgaac ttggtcaatc agcaaaggct gccgaatgcc gctttcaagc aacgcaattt
     1201 gttcagggtt aaagttggag acgccaaaat gccgaacctt gccactttgt tccaatgcat
     1261 caaaggccgc cgcaacgtca tcgacttcca ttaacggatc tggccgatgc agcaagaccg
     1321 aatcaaggta atcaacctgc aaccgtttca aaatgtgatc aaccgctgac agtaagtgat
     1381 cttttgaaaa gtcgtaccgt ttgccgaata ccaaactgcc atgagagcgt tttggatcaa
     1441 cgacgatccc gactttcgat tgaatgaata actgatcgcg ggaaacgctg gcttgcttca
     1501 aggcttcacc aaaaacttct tcggatttgc cttggccata aatgtcggcc gagtcgataa
     1561 agttgatgcc gtcattgtac gcactatcca gcacattggc cgctttgtcg ggggccagca
     1621 cattcatccg catgatgccc aaggccacac ttgacgcctg ccaattggat ccgcctaatc
     1681 gaacttgttt cataaacaca aaactccctt cgatacgtca tttcaaatta tgttactgac
     1741 gacaagttaa gtgtagcccc taaagtccac ttgaggtcaa gccaatatta gaatttcaat
     1801 aaaacagctt gcatggtgct gagctgcgcg gtaggttaaa ctgtgtttgt tacttatttt
     1861 ttcttagcag gataagccca taaaggaggc cgtgattttg acagttaaag ataaagtggt
     1921 tgtaatcaca ggtgcatcga gcgggattgg cgcggcaacg gtacaagtgt tggccgaggc
     1981 tggtgcaaaa ctagtcatcg gtgcgcggcg cacagaacgg ttggctgaat tggcggccag
     2041 ctttacggac ggtcaggtgc tgtatcaaca aaccgatgtg accgaccagc agcaagtgaa
     2101 agcgctgatt gatttggcgt tggataagtt tggtcatgtg gatgttttgt ataacaacgc
     2161 tggcctgatg ccactttctg aaatggccga actcaaagtc aacgaatggg agcggatgat
     2221 tgacgtcaac attaaaggcg tcttgtatgg gatcgccgcg gttttaccgc ctatgattgc
     2281 ccaacacagt ggccaaatta tcacaacaga ctcggtcgcc ggtcacattg ttcaccctgg
     2341 aaccgccgtt tactctggta ccaagtgggc tatccaggcg atcatggacg gcctgcgaca
     2401 agaacaagcg gctaatcata ttaaaacgac catgatctcg cccggtgccg tgaatactga
     2461 gcttttcagc acaattaccg atcctaagcg ccgtgaagct gttgaagccg atgaaaaaaa
     2521 caatggcctc agcgcctcgg atgttgccaa ggcagttttg tatgccattg atcaaccggc
     2581 caatgttgcc atcaatgaag tgctcttacg gccagtcacg caagaacgtt aattttcgtc
     2641 taaaggagtg tgattgcatg tcgggttatc attttttaaa accgttcacc ttcaagcacc
     2701 aaaccatcac gttgaaaaat cgcattgtca ttccgccgat gacaacgcgc ctgtcgtttg
     2761 aagacggcac tgtgacgcgg gacgaaatca ggtattacca gcaacgggcc ggtggcgtcg
     2821 gcatgtttat taccggtacc gccaatgtca atgcgcttgg caaaggattc gaaggtgagc
     2881 taagtgtcgc tgatgatcga ttcatccccg gtttgagcaa actcgccgct gcgatgaaaa
     2941 caggcggcac caaggctatt ttgcaaatct tcagtgctgg ccgcatgagc aatagcaaga
     3001 ttctgcgcgg tgagcagcca gtcagtgcca gtgcggttgc tgcgccacgg gcgggttacg
     3061 aaacaccgcg cgcattgaca ccggcagaaa ttgaggccac tattcacgat tttggtcagg
     3121 ccgtgcgccg cgccatcctt gctggttttg atggcatcga actgcatggt gccaacacat
     3181 atctgataca gcaattctat tcgccaaact ctaatcgccg aaccgatgaa tggggcggtg
     3241 accgcgataa gcggatgcgt tttccgttgg cagtcgttca tgaagcagaa aaaatgattg
     3301 ccacaattgc tgaccggcca tttttgttag gctaccgcat ttcgccggaa gagttggaac
     3361 agcctggcat taccttggat gataccttgg ccttaatcgc cgctttgaaa caaaccaaga
     3421 ttgattacct gcacgtctcc caaagtgacg tttggcgaac ctcattgcgc aaccccgagg
     3481 acacagccat catgaatgaa caaattcgta accacgtcgc cggtgctttt ccagtgattg
     3541 tggtcggtgg cattaaaacc cccgccgatg ctgagaaagc ggcagaatcc tttgatttgg
     3601 tcgcgattgg tcacgaaatg attcgcgagc cgcactgggt tcagaaggtc ttagaccatg
     3661 acgaaaaggc gatccgtttc cagatcgccc ctgctgatct tgaagaactt ggcattgcgc
     3721 cgaccttcct tgattttatc gaaagtattt ccggtggggc aaaaggtgtc ccgttaacaa
     3781 ctgcgcagtc tgtgacatca agcaacgtga ctcaagatta atctagcatt tcaaatcatc
     3841 gtgcgagtcg agctgtaaaa agctcgcctt ttttcttgcc gtcttcaact tacgcgatgg
     3901 tgcctgaagc taccagtgat ttataagttt taaatcaagg tgtgatcatc acctgctcac
     3961 gctctgattt aaacgcgttc accagcgcag ctcggctatg cgaagaacag tgacacagat
     4021 ggtccaaagc ccagaccatc tgtgtcactg ccacttcgct acgccgagct aaccgcgcca
     4081 gttcacgctc ttgtcatttt taacgggtcg acccatttat caaactgcgc tgctgtgacg
     4141 tcgccgcttt tgatggcggc tgcttttaga tcgaggtttt cttgctcagc caattgcgcg
     4201 atggcggcac ttttttcgta gccgatgtgg ggtgcgaggg cggtgaccag catgagcgaa
     4261 tgatcaacga gtgctctcat atgcggtgcg tggatggtca agccggcagc taatttttca
     4321 gtgaaactcg tgactgtttt ggttagtaga tcagctgact ctaaaaaggt actgatgata
     4381 accggcttgt agacgttcaa ttcaaaattg ccttgtgaag cggccaccgt gatcgtcgta
     4441 tcgttgccca tgactcgaac agcggccatg gttagcgctt cggcctgtgt gggattcact
     4501 ttgcccggca tgatggaact accaggctca ttggccggaa tgcgcaactc gccgtatcca
     4561 gcacgtggac cactggcaag gaagcgaatg tcattggcga ttttaagcag atcagccgct
     4621 agcgttttaa tggcaccatg aacaacgcta atttctgagt gagccgctaa agcagcaaac
     4681 ttattggttt tcgccgaaag tggtaattga taaacatcgc tcaatcggcc cgccacaatc
     4741 ttgccaaagt tagggtcagc gttaagcccc gttccgactg ctgttccgcc aatggctaag
     4801 taaaaaagat tgggctgaag ccgctttaaa gcaatctgat catgttccat catggccacc
     4861 catccgctga tttcttggcc aaacgttagc ggcgttgcat cctgtaaatg agttcgaccg
     4921 attttaacaa cacgagcgta agtgacggct tttgaatata aaacactgca cagttggttg
     4981 acagcgtgca gcaactgatt cactgcaata gccgacgtaa tattcatcac agttggaaaa
     5041 gtatcattgg agctttgact gtgattcaca tcatcattcg gtaagatcgg caagtcgggg
     5101 ttgagttttg cagcttggtg gctaatgact tcgttcacat tcatatttgt ttgtgtgcca
     5161 gacccggttt gatagacatg cagtggaaaa tctttttgca gtttttcgtc tggcaaggcc
     5221 aacaaggcat cgactgctcg cgttattaat tggccttttg gtgccggtaa aacatcagcg
     5281 gccacatttg ctcgcgctgc cgcttttttg agttgcagca aggccctaat cactggcatc
     5341 ggcatcaatg gaccagcctg aaaattatgg cggctgcgct ctgtttgcgg tccccacaaa
     5401 gcgtttgccg gaatttcaac tggtcctaat gtgtccgttt ctgttcgata tttgctcatg
     5461 tttacctc
//
