GCA_016890245.1 - 4 region(s)

Identified primary metabolite regions

JAFELK010000001 (original name was: JAFELK010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Pyruvate2acetate-formate	SCFA	136,005	159,249	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAFELK010000012 (original name was: JAFELK010000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Flavoenzyme_sugar_catabolism	Putative	19,028	44,768

JAFELK010000014 (original name was: JAFELK010000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	TPP_AA_metabolism	Putative	35,293	67,428

JAFELK010000009 (original name was: JAFELK010000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 87.1	TPP_fatty_acids	Putative	26,405	52,106

No primary metabolite regions were found in these records:: JAFELK010000010 (original name was: JAFELK010000010.1); JAFELK010000011 (original name was: JAFELK010000011.1); JAFELK010000013 (original name was: JAFELK010000013.1); JAFELK010000015 (original name was: JAFELK010000015.1); JAFELK010000016 (original name was: JAFELK010000016.1); JAFELK010000017 (original name was: JAFELK010000017.1); JAFELK010000018 (original name was: JAFELK010000018.1); JAFELK010000019 (original name was: JAFELK010000019.1); JAFELK010000002 (original name was: JAFELK010000002.1); JAFELK010000020 (original name was: JAFELK010000020.1); JAFELK010000021 (original name was: JAFELK010000021.1); JAFELK010000022 (original name was: JAFELK010000022.1); JAFELK010000023 (original name was: JAFELK010000023.1); JAFELK010000024 (original name was: JAFELK010000024.1); JAFELK010000025 (original name was: JAFELK010000025.1); JAFELK010000026 (original name was: JAFELK010000026.1); JAFELK010000027 (original name was: JAFELK010000027.1); JAFELK010000028 (original name was: JAFELK010000028.1); JAFELK010000029 (original name was: JAFELK010000029.1); JAFELK010000003 (original name was: JAFELK010000003.1); JAFELK010000030 (original name was: JAFELK010000030.1); JAFELK010000031 (original name was: JAFELK010000031.1); JAFELK010000032 (original name was: JAFELK010000032.1); JAFELK010000033 (original name was: JAFELK010000033.1); JAFELK010000034 (original name was: JAFELK010000034.1); JAFELK010000035 (original name was: JAFELK010000035.1); JAFELK010000036 (original name was: JAFELK010000036.1); JAFELK010000037 (original name was: JAFELK010000037.1); JAFELK010000038 (original name was: JAFELK010000038.1); JAFELK010000039 (original name was: JAFELK010000039.1); JAFELK010000004 (original name was: JAFELK010000004.1); JAFELK010000040 (original name was: JAFELK010000040.1); JAFELK010000041 (original name was: JAFELK010000041.1); JAFELK010000042 (original name was: JAFELK010000042.1); JAFELK010000043 (original name was: JAFELK010000043.1); JAFELK010000044 (original name was: JAFELK010000044.1); JAFELK010000045 (original name was: JAFELK010000045.1); JAFELK010000046 (original name was: JAFELK010000046.1); JAFELK010000047 (original name was: JAFELK010000047.1); JAFELK010000048 (original name was: JAFELK010000048.1); JAFELK010000049 (original name was: JAFELK010000049.1); JAFELK010000005 (original name was: JAFELK010000005.1); JAFELK010000050 (original name was: JAFELK010000050.1); JAFELK010000051 (original name was: JAFELK010000051.1); JAFELK010000052 (original name was: JAFELK010000052.1); JAFELK010000053 (original name was: JAFELK010000053.1); JAFELK010000054 (original name was: JAFELK010000054.1); JAFELK010000055 (original name was: JAFELK010000055.1); JAFELK010000056 (original name was: JAFELK010000056.1); JAFELK010000057 (original name was: JAFELK010000057.1); JAFELK010000058 (original name was: JAFELK010000058.1); JAFELK010000059 (original name was: JAFELK010000059.1); JAFELK010000006 (original name was: JAFELK010000006.1); JAFELK010000060 (original name was: JAFELK010000060.1); JAFELK010000061 (original name was: JAFELK010000061.1); JAFELK010000062 (original name was: JAFELK010000062.1); JAFELK010000063 (original name was: JAFELK010000063.1); JAFELK010000064 (original name was: JAFELK010000064.1); JAFELK010000065 (original name was: JAFELK010000065.1); JAFELK010000066 (original name was: JAFELK010000066.1); JAFELK010000067 (original name was: JAFELK010000067.1); JAFELK010000068 (original name was: JAFELK010000068.1); JAFELK010000069 (original name was: JAFELK010000069.1); JAFELK010000007 (original name was: JAFELK010000007.1); JAFELK010000070 (original name was: JAFELK010000070.1); JAFELK010000071 (original name was: JAFELK010000071.1); JAFELK010000072 (original name was: JAFELK010000072.1); JAFELK010000073 (original name was: JAFELK010000073.1); JAFELK010000074 (original name was: JAFELK010000074.1); JAFELK010000075 (original name was: JAFELK010000075.1); JAFELK010000076 (original name was: JAFELK010000076.1); JAFELK010000077 (original name was: JAFELK010000077.1); JAFELK010000078 (original name was: JAFELK010000078.1); JAFELK010000079 (original name was: JAFELK010000079.1); JAFELK010000008 (original name was: JAFELK010000008.1); JAFELK010000080 (original name was: JAFELK010000080.1); JAFELK010000081 (original name was: JAFELK010000081.1); JAFELK010000082 (original name was: JAFELK010000082.1); JAFELK010000083 (original name was: JAFELK010000083.1); JAFELK010000084 (original name was: JAFELK010000084.1); JAFELK010000085 (original name was: JAFELK010000085.1); JAFELK010000086 (original name was: JAFELK010000086.1); JAFELK010000087 (original name was: JAFELK010000087.1); JAFELK010000088 (original name was: JAFELK010000088.1); JAFELK010000089 (original name was: JAFELK010000089.1)

Compact view

c00001_JAFELK0.. - Region 1 - Pyruvate2acetate-formate

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Location: 136,005 - 159,249 nt. (total: 23,245 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00004_JAFELK0.. - Region 1 - Flavoenzyme_sugar_catabolism

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Location: 19,028 - 44,768 nt. (total: 25,741 nt) Show pHMM detection rules used

Flavoenzyme_sugar_catabolism: ((cds(Pyr_redox_2 and Oxidored_FMN) or baiCD or baiH) and minimum(2, [Alpha-amylase, Glyco_hydro_1, Glyco_hydro_25, Glyco_hydro_36, Glycos_transf_3, PTS_EIIC, Polysacc_deac_1]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00006_JAFELK0.. - Region 1 - TPP_AA_metabolism

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Location: 35,293 - 67,428 nt. (total: 32,136 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00087_JAFELK0.. - Region 1 - TPP_fatty_acids

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Location: 26,405 - 52,106 nt. (total: 25,702 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.