GCA_017156775.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JAFIWH010000067 (original name was: JAFIWH010000067.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	lanthipeptide-class-iv	36,516	50,042

JAFIWH010000069 (original name was: JAFIWH010000069.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	lanthipeptide-class-iv	26,797	44,319

JAFIWH010000070 (original name was: JAFIWH010000070.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	lanthipeptide-class-i	5,660	28,093

JAFIWH010000010 (original name was: JAFIWH010000010.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	NRPS	1	32,992	macedocin	RiPP:Lanthipeptide	28%

JAFIWH010000012 (original name was: JAFIWH010000012.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	RaS-RiPP	1	17,969

JAFIWH010000016 (original name was: JAFIWH010000016.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	NRPS-like	1	19,357	asukamycin	Polyketide:Type II	4%

Region	Type	From	To	Most similar known cluster	Similarity
Region 5.1	lanthipeptide-class-iv	36,516	50,042
Region 7.1	lanthipeptide-class-iv	26,797	44,319
Region 8.1	lanthipeptide-class-i	5,660	28,093
Region 14.1	NRPS	1	32,992	macedocin	RiPP:Lanthipeptide	28%
Region 16.1	RaS-RiPP	1	17,969
Region 20.1	NRPS-like	1	19,357	asukamycin	Polyketide:Type II	4%

No secondary metabolite regions were found in these records:: JAFIWH010000063 (original name was: JAFIWH010000063.1); JAFIWH010000064 (original name was: JAFIWH010000064.1); JAFIWH010000065 (original name was: JAFIWH010000065.1); JAFIWH010000066 (original name was: JAFIWH010000066.1); JAFIWH010000068 (original name was: JAFIWH010000068.1); JAFIWH010000006 (original name was: JAFIWH010000006.1); JAFIWH010000007 (original name was: JAFIWH010000007.1); JAFIWH010000071 (original name was: JAFIWH010000071.1); JAFIWH010000008 (original name was: JAFIWH010000008.1); JAFIWH010000009 (original name was: JAFIWH010000009.1); JAFIWH010000011 (original name was: JAFIWH010000011.1); JAFIWH010000013 (original name was: JAFIWH010000013.1); JAFIWH010000014 (original name was: JAFIWH010000014.1); JAFIWH010000015 (original name was: JAFIWH010000015.1); JAFIWH010000017 (original name was: JAFIWH010000017.1); JAFIWH010000072 (original name was: JAFIWH010000072.1); JAFIWH010000018 (original name was: JAFIWH010000018.1); JAFIWH010000019 (original name was: JAFIWH010000019.1); JAFIWH010000020 (original name was: JAFIWH010000020.1); JAFIWH010000021 (original name was: JAFIWH010000021.1); JAFIWH010000022 (original name was: JAFIWH010000022.1); JAFIWH010000023 (original name was: JAFIWH010000023.1); JAFIWH010000024 (original name was: JAFIWH010000024.1); JAFIWH010000025 (original name was: JAFIWH010000025.1); JAFIWH010000026 (original name was: JAFIWH010000026.1); JAFIWH010000027 (original name was: JAFIWH010000027.1); JAFIWH010000073 (original name was: JAFIWH010000073.1); JAFIWH010000028 (original name was: JAFIWH010000028.1); JAFIWH010000029 (original name was: JAFIWH010000029.1); JAFIWH010000030 (original name was: JAFIWH010000030.1); JAFIWH010000031 (original name was: JAFIWH010000031.1); JAFIWH010000032 (original name was: JAFIWH010000032.1); JAFIWH010000033 (original name was: JAFIWH010000033.1); JAFIWH010000034 (original name was: JAFIWH010000034.1); JAFIWH010000035 (original name was: JAFIWH010000035.1); JAFIWH010000036 (original name was: JAFIWH010000036.1); JAFIWH010000037 (original name was: JAFIWH010000037.1); JAFIWH010000074 (original name was: JAFIWH010000074.1); JAFIWH010000038 (original name was: JAFIWH010000038.1); JAFIWH010000001 (original name was: JAFIWH010000001.1); JAFIWH010000002 (original name was: JAFIWH010000002.1); JAFIWH010000003 (original name was: JAFIWH010000003.1); JAFIWH010000004 (original name was: JAFIWH010000004.1); JAFIWH010000005 (original name was: JAFIWH010000005.1)

Compact view

c00005_JAFIWH0.. - Region 1 - lanthipeptide-class-iv

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Location: 36,516 - 50,042 nt. (total: 13,527 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00007_JAFIWH0.. - Region 1 - lanthipeptide-class-iv

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Location: 26,797 - 44,319 nt. (total: 17,523 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00008_JAFIWH0.. - Region 1 - lanthipeptide-class-i

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Location: 5,660 - 28,093 nt. (total: 22,434 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00014_JAFIWH0.. - Region 1 - NRPS

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Location: 1 - 32,992 nt. (total: 32,992 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 32992:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg14_15

Search NORINE for peptide: strict or relaxed

AMP-binding (13..412): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DFwSLgAVcK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 70% (weak)

ctg14_16

Search NORINE for peptide: strict or relaxed

AMP-binding (248..639): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DnWSyGeItK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 60% (weak)

c00016_JAFIWH0.. - Region 1 - RaS-RiPP

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Location: 1 - 17,969 nt. (total: 17,969 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00020_JAFIWH0.. - Region 1 - NRPS-like

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Location: 1 - 19,357 nt. (total: 19,357 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters