GCA_017353475.1 - 8 region(s)

Identified primary metabolite regions

JAFMQA010000013 (original name was: JAFMQA010000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Fumarate2succinate	SCFA	20,599	43,190	Acetate to butyrate C. sporogenes	BUT	33%

JAFMQA010000018 (original name was: JAFMQA010000018.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	fatty_acids-unassigned	Putative	16,507	40,030	Acetate to butyrate C. sporogenes	BUT	33%

JAFMQA010000001 (original name was: JAFMQA010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	TPP_AA_metabolism	Putative	187,414	224,020	Acetyl-CoA pathway C. beijerinckii	Acetate	13%

JAFMQA010000023 (original name was: JAFMQA010000023.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Pyruvate2acetate-formate	SCFA	1	18,812	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAFMQA010000029 (original name was: JAFMQA010000029.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	Putrescine2spermidine	Aliphatic_amine	8,711	31,094	Arginine2putrescine R. gnavus	PUTR	40%

JAFMQA010000006 (original name was: JAFMQA010000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 65.1	TPP_AA_metabolism	Putative	45,645	76,876

JAFMQA010000007 (original name was: JAFMQA010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 66.1	fatty_acids-unassigned	Putative	13,462	39,335	Acetate to butyrate C. sporogenes	BUT	33%

JAFMQA010000009 (original name was: JAFMQA010000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 68.1	Oxidative_glycerol	Other	4,235	37,092

No primary metabolite regions were found in these records:: JAFMQA010000010 (original name was: JAFMQA010000010.1); JAFMQA010000011 (original name was: JAFMQA010000011.1); JAFMQA010000012 (original name was: JAFMQA010000012.1); JAFMQA010000014 (original name was: JAFMQA010000014.1); JAFMQA010000015 (original name was: JAFMQA010000015.1); JAFMQA010000016 (original name was: JAFMQA010000016.1); JAFMQA010000017 (original name was: JAFMQA010000017.1); JAFMQA010000019 (original name was: JAFMQA010000019.1); JAFMQA010000020 (original name was: JAFMQA010000020.1); JAFMQA010000021 (original name was: JAFMQA010000021.1); JAFMQA010000022 (original name was: JAFMQA010000022.1); JAFMQA010000024 (original name was: JAFMQA010000024.1); JAFMQA010000025 (original name was: JAFMQA010000025.1); JAFMQA010000026 (original name was: JAFMQA010000026.1); JAFMQA010000027 (original name was: JAFMQA010000027.1); JAFMQA010000028 (original name was: JAFMQA010000028.1); JAFMQA010000002 (original name was: JAFMQA010000002.1); JAFMQA010000030 (original name was: JAFMQA010000030.1); JAFMQA010000031 (original name was: JAFMQA010000031.1); JAFMQA010000032 (original name was: JAFMQA010000032.1); JAFMQA010000033 (original name was: JAFMQA010000033.1); JAFMQA010000034 (original name was: JAFMQA010000034.1); JAFMQA010000035 (original name was: JAFMQA010000035.1); JAFMQA010000036 (original name was: JAFMQA010000036.1); JAFMQA010000037 (original name was: JAFMQA010000037.1); JAFMQA010000038 (original name was: JAFMQA010000038.1); JAFMQA010000039 (original name was: JAFMQA010000039.1); JAFMQA010000003 (original name was: JAFMQA010000003.1); JAFMQA010000040 (original name was: JAFMQA010000040.1); JAFMQA010000041 (original name was: JAFMQA010000041.1); JAFMQA010000042 (original name was: JAFMQA010000042.1); JAFMQA010000043 (original name was: JAFMQA010000043.1); JAFMQA010000044 (original name was: JAFMQA010000044.1); JAFMQA010000045 (original name was: JAFMQA010000045.1); JAFMQA010000046 (original name was: JAFMQA010000046.1); JAFMQA010000047 (original name was: JAFMQA010000047.1); JAFMQA010000048 (original name was: JAFMQA010000048.1); JAFMQA010000049 (original name was: JAFMQA010000049.1); JAFMQA010000004 (original name was: JAFMQA010000004.1); JAFMQA010000050 (original name was: JAFMQA010000050.1); JAFMQA010000051 (original name was: JAFMQA010000051.1); JAFMQA010000052 (original name was: JAFMQA010000052.1); JAFMQA010000053 (original name was: JAFMQA010000053.1); JAFMQA010000054 (original name was: JAFMQA010000054.1); JAFMQA010000055 (original name was: JAFMQA010000055.1); JAFMQA010000056 (original name was: JAFMQA010000056.1); JAFMQA010000057 (original name was: JAFMQA010000057.1); JAFMQA010000058 (original name was: JAFMQA010000058.1); JAFMQA010000059 (original name was: JAFMQA010000059.1); JAFMQA010000005 (original name was: JAFMQA010000005.1); JAFMQA010000060 (original name was: JAFMQA010000060.1); JAFMQA010000061 (original name was: JAFMQA010000061.1); JAFMQA010000062 (original name was: JAFMQA010000062.1); JAFMQA010000063 (original name was: JAFMQA010000063.1); JAFMQA010000064 (original name was: JAFMQA010000064.1); JAFMQA010000065 (original name was: JAFMQA010000065.1); JAFMQA010000066 (original name was: JAFMQA010000066.1); JAFMQA010000067 (original name was: JAFMQA010000067.1); JAFMQA010000068 (original name was: JAFMQA010000068.1); JAFMQA010000008 (original name was: JAFMQA010000008.1)

Compact view

c00004_JAFMQA0.. - Region 1 - Fumarate2succinate

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Location: 20,599 - 43,190 nt. (total: 22,592 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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Similar known gene clusters

c00009_JAFMQA0.. - Region 1 - fatty_acids-unassigned

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Location: 16,507 - 40,030 nt. (total: 23,524 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00011_JAFMQA0.. - Region 1 - TPP_AA_metabolism

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Location: 187,414 - 224,020 nt. (total: 36,607 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00015_JAFMQA0.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 18,812 nt. (total: 18,812 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00021_JAFMQA0.. - Region 1 - Putrescine2spermidine

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Location: 8,711 - 31,094 nt. (total: 22,384 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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c00065_JAFMQA0.. - Region 1 - TPP_AA_metabolism

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Location: 45,645 - 76,876 nt. (total: 31,232 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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No matches found.

c00066_JAFMQA0.. - Region 1 - fatty_acids-unassigned

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Location: 13,462 - 39,335 nt. (total: 25,874 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00068_JAFMQA0.. - Region 1 - Oxidative_glycerol

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Location: 4,235 - 37,092 nt. (total: 32,858 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

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