GCA_017580955.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

WWDA01000001.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	cyclic-lactone-autoinducer	294,394	315,099

WWDA01000023.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	T3PKS	1	38,504

WWDA01000025.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	terpene	33,085	52,671

WWDA01000034.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	lanthipeptide-class-iii	21,866	35,615

WWDA01000053.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 48.1	NRPS	1	8,946

WWDA01000009.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 99.1	RiPP-like	1	6,365

Region	Type	From	To	Similarity
Region 11.1	cyclic-lactone-autoinducer	294,394	315,099
Region 15.1	T3PKS	1	38,504
Region 17.1	terpene	33,085	52,671
Region 27.1	lanthipeptide-class-iii	21,866	35,615
Region 48.1	NRPS	1	8,946
Region 99.1	RiPP-like	1	6,365

Compact view

WWDA01000001.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 294,394 - 315,099 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

WWDA01000023.1 - Region 1 - T3PKS

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Location: 1 - 38,504 nt. (total: 38,504 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

WWDA01000025.1 - Region 1 - terpene

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Location: 33,085 - 52,671 nt. (total: 19,587 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

WWDA01000034.1 - Region 1 - lanthipeptide-class-iii

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Location: 21,866 - 35,615 nt. (total: 13,750 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iii: (micKC and not PKS_KS)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

WWDA01000053.1 - Region 1 - NRPS

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Location: 1 - 8,946 nt. (total: 8,946 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 8946:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg48_2

Search NORINE for peptide: strict or relaxed

AMP-binding (26..193): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DI-------K
Nearest Stachelhaus code:: phg
Stachelhaus code match:: 30% (weak)

ctg48_4

Search NORINE for peptide: strict or relaxed

AMP-binding (533..923): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

WWDA01000009.1 - Region 1 - RiPP-like

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Location: 1 - 6,365 nt. (total: 6,365 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.