GCA_017592405.1 - 8 region(s)

Identified primary metabolite regions

JAGFNE010000001 (original name was: JAGFNE010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Fumarate2succinate	SCFA	259,470	281,994	Acetate to butyrate C. sporogenes	BUT	33%
Region 1.2	TPP_AA_metabolism	Putative	312,224	335,515
Region 1.3	fatty_acids-unassigned	Putative	680,011	703,247	Acetate to butyrate C. sporogenes	BUT	50%

JAGFNE010000014 (original name was: JAGFNE010000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Putrescine2spermidine,Nitrate_reductase	E-MGC	1	43,031	Nitrate reductase E. coli	NIR	60%

JAGFNE010000002 (original name was: JAGFNE010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	fatty_acids-unassigned	Putative	183,493	236,337

JAGFNE010000003 (original name was: JAGFNE010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	fatty_acids-unassigned	Putative	169,064	194,421	Acetate to butyrate C. sporogenes	BUT	33%

JAGFNE010000004 (original name was: JAGFNE010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	histidine2glutamate_hutHGIU_operon	Other	174,544	199,955	Histidine to glutamate K. pneumoniae	GLU	60%

JAGFNE010000007 (original name was: JAGFNE010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	hydroxybenzoate2phenol	Aromatic	192,265	214,303	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

No primary metabolite regions were found in these records:: JAGFNE010000010 (original name was: JAGFNE010000010.1); JAGFNE010000011 (original name was: JAGFNE010000011.1); JAGFNE010000012 (original name was: JAGFNE010000012.1); JAGFNE010000013 (original name was: JAGFNE010000013.1); JAGFNE010000015 (original name was: JAGFNE010000015.1); JAGFNE010000016 (original name was: JAGFNE010000016.1); JAGFNE010000017 (original name was: JAGFNE010000017.1); JAGFNE010000018 (original name was: JAGFNE010000018.1); JAGFNE010000019 (original name was: JAGFNE010000019.1); JAGFNE010000020 (original name was: JAGFNE010000020.1); JAGFNE010000021 (original name was: JAGFNE010000021.1); JAGFNE010000022 (original name was: JAGFNE010000022.1); JAGFNE010000005 (original name was: JAGFNE010000005.1); JAGFNE010000006 (original name was: JAGFNE010000006.1); JAGFNE010000008 (original name was: JAGFNE010000008.1); JAGFNE010000009 (original name was: JAGFNE010000009.1)

Compact view

c00001_JAGFNE0.. - Region 1 - Fumarate2succinate

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Location: 259,470 - 281,994 nt. (total: 22,525 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00001_JAGFNE0.. - Region 2 - TPP_AA_metabolism

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Location: 312,224 - 335,515 nt. (total: 23,292 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00001_JAGFNE0.. - Region 3 - fatty_acids-unassigned

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Location: 680,011 - 703,247 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00006_JAGFNE0.. - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 1 - 43,031 nt. (total: 43,031 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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c00012_JAGFNE0.. - Region 1 - fatty_acids-unassigned

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Location: 183,493 - 236,337 nt. (total: 52,845 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00016_JAGFNE0.. - Region 1 - fatty_acids-unassigned

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Location: 169,064 - 194,421 nt. (total: 25,358 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00017_JAGFNE0.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 174,544 - 199,955 nt. (total: 25,412 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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c00020_JAGFNE0.. - Region 1 - hydroxybenzoate2phenol

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Location: 192,265 - 214,303 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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