GCA_017599395.1 - 7 region(s)

Identified primary metabolite regions

JAGFPI010000016 (original name was: JAGFPI010000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Fumarate2succinate	SCFA	53,183	73,723	Acetate to butyrate C. sporogenes	BUT	33%

JAGFPI010000020 (original name was: JAGFPI010000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	histidine2glutamate_hutHGIU_operon	Other	342	25,753	Histidine to glutamate K. pneumoniae	GLU	60%

JAGFPI010000022 (original name was: JAGFPI010000022.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	TPP_AA_metabolism	Putative	33,386	56,677

JAGFPI010000002 (original name was: JAGFPI010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	fatty_acids-unassigned	Putative	180,405	205,771	Acetate to butyrate C. sporogenes	BUT	33%

JAGFPI010000004 (original name was: JAGFPI010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	Putrescine2spermidine,Nitrate_reductase	E-MGC	144,201	190,241	Nitrate reductase E. coli	NIR	60%

JAGFPI010000006 (original name was: JAGFPI010000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 66.1	hydroxybenzoate2phenol	Aromatic	31,300	53,338	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

JAGFPI010000009 (original name was: JAGFPI010000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 86.1	fatty_acids-unassigned	Putative	15,266	38,502	Acetate to butyrate C. sporogenes	BUT	50%

No primary metabolite regions were found in these records:: JAGFPI010000010 (original name was: JAGFPI010000010.1); JAGFPI010000011 (original name was: JAGFPI010000011.1); JAGFPI010000012 (original name was: JAGFPI010000012.1); JAGFPI010000013 (original name was: JAGFPI010000013.1); JAGFPI010000014 (original name was: JAGFPI010000014.1); JAGFPI010000015 (original name was: JAGFPI010000015.1); JAGFPI010000017 (original name was: JAGFPI010000017.1); JAGFPI010000018 (original name was: JAGFPI010000018.1); JAGFPI010000019 (original name was: JAGFPI010000019.1); JAGFPI010000001 (original name was: JAGFPI010000001.1); JAGFPI010000021 (original name was: JAGFPI010000021.1); JAGFPI010000023 (original name was: JAGFPI010000023.1); JAGFPI010000024 (original name was: JAGFPI010000024.1); JAGFPI010000025 (original name was: JAGFPI010000025.1); JAGFPI010000026 (original name was: JAGFPI010000026.1); JAGFPI010000027 (original name was: JAGFPI010000027.1); JAGFPI010000028 (original name was: JAGFPI010000028.1); JAGFPI010000029 (original name was: JAGFPI010000029.1); JAGFPI010000030 (original name was: JAGFPI010000030.1); JAGFPI010000031 (original name was: JAGFPI010000031.1); JAGFPI010000032 (original name was: JAGFPI010000032.1); JAGFPI010000033 (original name was: JAGFPI010000033.1); JAGFPI010000034 (original name was: JAGFPI010000034.1); JAGFPI010000035 (original name was: JAGFPI010000035.1); JAGFPI010000036 (original name was: JAGFPI010000036.1); JAGFPI010000037 (original name was: JAGFPI010000037.1); JAGFPI010000038 (original name was: JAGFPI010000038.1); JAGFPI010000039 (original name was: JAGFPI010000039.1); JAGFPI010000003 (original name was: JAGFPI010000003.1); JAGFPI010000040 (original name was: JAGFPI010000040.1); JAGFPI010000041 (original name was: JAGFPI010000041.1); JAGFPI010000042 (original name was: JAGFPI010000042.1); JAGFPI010000043 (original name was: JAGFPI010000043.1); JAGFPI010000044 (original name was: JAGFPI010000044.1); JAGFPI010000045 (original name was: JAGFPI010000045.1); JAGFPI010000046 (original name was: JAGFPI010000046.1); JAGFPI010000047 (original name was: JAGFPI010000047.1); JAGFPI010000048 (original name was: JAGFPI010000048.1); JAGFPI010000049 (original name was: JAGFPI010000049.1); JAGFPI010000050 (original name was: JAGFPI010000050.1); JAGFPI010000051 (original name was: JAGFPI010000051.1); JAGFPI010000052 (original name was: JAGFPI010000052.1); JAGFPI010000053 (original name was: JAGFPI010000053.1); JAGFPI010000054 (original name was: JAGFPI010000054.1); JAGFPI010000055 (original name was: JAGFPI010000055.1); JAGFPI010000056 (original name was: JAGFPI010000056.1); JAGFPI010000057 (original name was: JAGFPI010000057.1); JAGFPI010000058 (original name was: JAGFPI010000058.1); JAGFPI010000059 (original name was: JAGFPI010000059.1); JAGFPI010000005 (original name was: JAGFPI010000005.1); JAGFPI010000060 (original name was: JAGFPI010000060.1); JAGFPI010000061 (original name was: JAGFPI010000061.1); JAGFPI010000062 (original name was: JAGFPI010000062.1); JAGFPI010000063 (original name was: JAGFPI010000063.1); JAGFPI010000064 (original name was: JAGFPI010000064.1); JAGFPI010000065 (original name was: JAGFPI010000065.1); JAGFPI010000066 (original name was: JAGFPI010000066.1); JAGFPI010000067 (original name was: JAGFPI010000067.1); JAGFPI010000068 (original name was: JAGFPI010000068.1); JAGFPI010000069 (original name was: JAGFPI010000069.1); JAGFPI010000070 (original name was: JAGFPI010000070.1); JAGFPI010000071 (original name was: JAGFPI010000071.1); JAGFPI010000072 (original name was: JAGFPI010000072.1); JAGFPI010000073 (original name was: JAGFPI010000073.1); JAGFPI010000074 (original name was: JAGFPI010000074.1); JAGFPI010000075 (original name was: JAGFPI010000075.1); JAGFPI010000076 (original name was: JAGFPI010000076.1); JAGFPI010000077 (original name was: JAGFPI010000077.1); JAGFPI010000078 (original name was: JAGFPI010000078.1); JAGFPI010000079 (original name was: JAGFPI010000079.1); JAGFPI010000007 (original name was: JAGFPI010000007.1); JAGFPI010000080 (original name was: JAGFPI010000080.1); JAGFPI010000081 (original name was: JAGFPI010000081.1); JAGFPI010000082 (original name was: JAGFPI010000082.1); JAGFPI010000083 (original name was: JAGFPI010000083.1); JAGFPI010000084 (original name was: JAGFPI010000084.1); JAGFPI010000085 (original name was: JAGFPI010000085.1); JAGFPI010000086 (original name was: JAGFPI010000086.1); JAGFPI010000008 (original name was: JAGFPI010000008.1)

Compact view

c00007_JAGFPI0.. - Region 1 - Fumarate2succinate

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Location: 53,183 - 73,723 nt. (total: 20,541 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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c00012_JAGFPI0.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 342 - 25,753 nt. (total: 25,412 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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resistance genes

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c00014_JAGFPI0.. - Region 1 - TPP_AA_metabolism

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Location: 33,386 - 56,677 nt. (total: 23,292 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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KnownClusterBlast

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No matches found.

c00022_JAGFPI0.. - Region 1 - fatty_acids-unassigned

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Location: 180,405 - 205,771 nt. (total: 25,367 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00044_JAGFPI0.. - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 144,201 - 190,241 nt. (total: 46,041 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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resistance genes

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c00066_JAGFPI0.. - Region 1 - hydroxybenzoate2phenol

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Location: 31,300 - 53,338 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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c00086_JAGFPI0.. - Region 1 - fatty_acids-unassigned

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Location: 15,266 - 38,502 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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