GCA_017601115.1 - 8 region(s)

Identified primary metabolite regions

JAGFPW010000001 (original name was: JAGFPW010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	fatty_acids-unassigned	Putative	104,594	127,830	Acetate to butyrate C. sporogenes	BUT	50%
Region 1.2	TPP_AA_metabolism	Putative	428,870	452,161
Region 1.3	Fumarate2succinate	SCFA	482,845	505,369	Acetate to butyrate C. sporogenes	BUT	33%

JAGFPW010000002 (original name was: JAGFPW010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	fatty_acids-unassigned	Putative	270,444	295,876	Acetate to butyrate C. sporogenes	BUT	33%

JAGFPW010000030 (original name was: JAGFPW010000030.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	Nitrate_reductase,Putrescine2spermidine	Aliphatic_amine	2,777	45,449	Nitrate reductase E. coli	NIR	60%

JAGFPW010000037 (original name was: JAGFPW010000037.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	fatty_acids-unassigned	Putative	1	24,617

JAGFPW010000004 (original name was: JAGFPW010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	histidine2glutamate_hutHGIU_operon	Other	173,323	198,614	Histidine to glutamate K. pneumoniae	GLU	60%

JAGFPW010000007 (original name was: JAGFPW010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 65.1	hydroxybenzoate2phenol	Aromatic	5,350	27,388	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

No primary metabolite regions were found in these records:: JAGFPW010000010 (original name was: JAGFPW010000010.1); JAGFPW010000011 (original name was: JAGFPW010000011.1); JAGFPW010000012 (original name was: JAGFPW010000012.1); JAGFPW010000013 (original name was: JAGFPW010000013.1); JAGFPW010000014 (original name was: JAGFPW010000014.1); JAGFPW010000015 (original name was: JAGFPW010000015.1); JAGFPW010000016 (original name was: JAGFPW010000016.1); JAGFPW010000017 (original name was: JAGFPW010000017.1); JAGFPW010000018 (original name was: JAGFPW010000018.1); JAGFPW010000019 (original name was: JAGFPW010000019.1); JAGFPW010000020 (original name was: JAGFPW010000020.1); JAGFPW010000021 (original name was: JAGFPW010000021.1); JAGFPW010000022 (original name was: JAGFPW010000022.1); JAGFPW010000023 (original name was: JAGFPW010000023.1); JAGFPW010000024 (original name was: JAGFPW010000024.1); JAGFPW010000025 (original name was: JAGFPW010000025.1); JAGFPW010000026 (original name was: JAGFPW010000026.1); JAGFPW010000027 (original name was: JAGFPW010000027.1); JAGFPW010000028 (original name was: JAGFPW010000028.1); JAGFPW010000029 (original name was: JAGFPW010000029.1); JAGFPW010000003 (original name was: JAGFPW010000003.1); JAGFPW010000031 (original name was: JAGFPW010000031.1); JAGFPW010000032 (original name was: JAGFPW010000032.1); JAGFPW010000033 (original name was: JAGFPW010000033.1); JAGFPW010000034 (original name was: JAGFPW010000034.1); JAGFPW010000035 (original name was: JAGFPW010000035.1); JAGFPW010000036 (original name was: JAGFPW010000036.1); JAGFPW010000038 (original name was: JAGFPW010000038.1); JAGFPW010000039 (original name was: JAGFPW010000039.1); JAGFPW010000040 (original name was: JAGFPW010000040.1); JAGFPW010000041 (original name was: JAGFPW010000041.1); JAGFPW010000042 (original name was: JAGFPW010000042.1); JAGFPW010000043 (original name was: JAGFPW010000043.1); JAGFPW010000044 (original name was: JAGFPW010000044.1); JAGFPW010000045 (original name was: JAGFPW010000045.1); JAGFPW010000046 (original name was: JAGFPW010000046.1); JAGFPW010000047 (original name was: JAGFPW010000047.1); JAGFPW010000048 (original name was: JAGFPW010000048.1); JAGFPW010000049 (original name was: JAGFPW010000049.1); JAGFPW010000005 (original name was: JAGFPW010000005.1); JAGFPW010000050 (original name was: JAGFPW010000050.1); JAGFPW010000051 (original name was: JAGFPW010000051.1); JAGFPW010000052 (original name was: JAGFPW010000052.1); JAGFPW010000053 (original name was: JAGFPW010000053.1); JAGFPW010000054 (original name was: JAGFPW010000054.1); JAGFPW010000055 (original name was: JAGFPW010000055.1); JAGFPW010000056 (original name was: JAGFPW010000056.1); JAGFPW010000057 (original name was: JAGFPW010000057.1); JAGFPW010000058 (original name was: JAGFPW010000058.1); JAGFPW010000059 (original name was: JAGFPW010000059.1); JAGFPW010000006 (original name was: JAGFPW010000006.1); JAGFPW010000060 (original name was: JAGFPW010000060.1); JAGFPW010000061 (original name was: JAGFPW010000061.1); JAGFPW010000062 (original name was: JAGFPW010000062.1); JAGFPW010000063 (original name was: JAGFPW010000063.1); JAGFPW010000064 (original name was: JAGFPW010000064.1); JAGFPW010000065 (original name was: JAGFPW010000065.1); JAGFPW010000066 (original name was: JAGFPW010000066.1); JAGFPW010000067 (original name was: JAGFPW010000067.1); JAGFPW010000008 (original name was: JAGFPW010000008.1); JAGFPW010000009 (original name was: JAGFPW010000009.1)

Compact view

c00001_JAGFPW0.. - Region 1 - fatty_acids-unassigned

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Location: 104,594 - 127,830 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00001_JAGFPW0.. - Region 2 - TPP_AA_metabolism

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Location: 428,870 - 452,161 nt. (total: 23,292 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00001_JAGFPW0.. - Region 3 - Fumarate2succinate

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Location: 482,845 - 505,369 nt. (total: 22,525 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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c00012_JAGFPW0.. - Region 1 - fatty_acids-unassigned

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Location: 270,444 - 295,876 nt. (total: 25,433 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

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resistance genes

encapsulation genes

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KnownClusterBlast

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c00024_JAGFPW0.. - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 2,777 - 45,449 nt. (total: 42,673 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

encapsulation genes

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c00031_JAGFPW0.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 24,617 nt. (total: 24,617 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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No matches found.

c00034_JAGFPW0.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 173,323 - 198,614 nt. (total: 25,292 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00065_JAGFPW0.. - Region 1 - hydroxybenzoate2phenol

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Location: 5,350 - 27,388 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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