GCA_017963505.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JAGMWB010000001 (original name was: JAGMWB010000001.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	cyclic-lactone-autoinducer	21,821	42,526

JAGMWB010000027 (original name was: JAGMWB010000027.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	NRPS	4,735	37,261

JAGMWB010000035 (original name was: JAGMWB010000035.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	RiPP-like	1	10,539

JAGMWB010000038 (original name was: JAGMWB010000038.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 32.1	NRPS,NRPS-like	1	23,132

JAGMWB010000008 (original name was: JAGMWB010000008.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 78.1	T3PKS	65,202	96,286

JAGMWB010000009 (original name was: JAGMWB010000009.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 89.1	terpene	26,028	46,909

Region	Type	From	To	Similarity
Region 1.1	cyclic-lactone-autoinducer	21,821	42,526
Region 20.1	NRPS	4,735	37,261
Region 29.1	RiPP-like	1	10,539
Region 32.1	NRPS,NRPS-like	1	23,132
Region 78.1	T3PKS	65,202	96,286
Region 89.1	terpene	26,028	46,909

Compact view

c00001_JAGMWB0.. - Region 1 - cyclic-lactone-autoinducer

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Location: 21,821 - 42,526 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00020_JAGMWB0.. - Region 1 - NRPS

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Location: 4,735 - 37,261 nt. (total: 32,527 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 4734 - 37261:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X - D-ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg20_23

Search NORINE for peptide: strict or relaxed

AMP-binding (8..381): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: sVtqAAvagK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 40% (weak)

AMP-binding (1000..1372): X

NRPSPredictor2: orn, lys, arg

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DshgyGCVlK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 50% (weak)

AMP-binding (1967..2333): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVLiVAaViK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 70% (weak)

AMP-binding (2921..3307): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

c00029_JAGMWB0.. - Region 1 - RiPP-like

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Location: 1 - 10,539 nt. (total: 10,539 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00032_JAGMWB0.. - Region 1 - NRPS,NRPS-like

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Location: 1 - 23,132 nt. (total: 23,132 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 23132:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 10 - 23131:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg32_16

Search NORINE for peptide: strict or relaxed

AMP-binding (11..374): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: vvynTAvaCK
Nearest Stachelhaus code:: his
Stachelhaus code match:: 40% (weak)

ctg32_19

Search NORINE for peptide: strict or relaxed

AMP-binding (124..502): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DItQmGiVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 70% (weak)

c00078_JAGMWB0.. - Region 1 - T3PKS

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Location: 65,202 - 96,286 nt. (total: 31,085 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00089_JAGMWB0.. - Region 1 - terpene

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Location: 26,028 - 46,909 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.