GCA_018122455.1 - 9 region(s)

Identified primary metabolite regions

VBRR01000015.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	TPP_AA_metabolism	Putative	155	23,446

VBRR01000018.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	fatty_acids-unassigned	Putative	8,064	31,300	Acetate to butyrate C. sporogenes	BUT	50%

VBRR01000021.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	fatty_acids-unassigned	Putative	1	48,224

VBRR01000035.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	fatty_acids-unassigned	Putative	48,425	73,857	Acetate to butyrate C. sporogenes	BUT	33%

VBRR01000049.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 40.1	Nitrate_reductase	E-MGC	89,615	112,071	Nitrate reductase E. coli	NIR	60%

VBRR01000057.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 48.1	Putrescine2spermidine	Aliphatic_amine	2,715	23,545	Arginine2putrescine R. gnavus	PUTR	40%
Region 48.2	histidine2glutamate_hutHGIU_operon	Other	188,996	214,407	Histidine to glutamate K. pneumoniae	GLU	60%

VBRR01000083.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 73.1	Fumarate2succinate	SCFA	1	15,270	Acetate to butyrate C. sporogenes	BUT	33%

VBRR01000098.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 88.1	hydroxybenzoate2phenol	Aromatic	172,770	194,808	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 12.1	TPP_AA_metabolism	Putative	155	23,446
Region 14.1	fatty_acids-unassigned	Putative	8,064	31,300	Acetate to butyrate C. sporogenes	BUT	50%
Region 16.1	fatty_acids-unassigned	Putative	1	48,224
Region 28.1	fatty_acids-unassigned	Putative	48,425	73,857	Acetate to butyrate C. sporogenes	BUT	33%
Region 40.1	Nitrate_reductase	E-MGC	89,615	112,071	Nitrate reductase E. coli	NIR	60%
Region 48.1	Putrescine2spermidine	Aliphatic_amine	2,715	23,545	Arginine2putrescine R. gnavus	PUTR	40%
Region 48.2	histidine2glutamate_hutHGIU_operon	Other	188,996	214,407	Histidine to glutamate K. pneumoniae	GLU	60%
Region 73.1	Fumarate2succinate	SCFA	1	15,270	Acetate to butyrate C. sporogenes	BUT	33%
Region 88.1	hydroxybenzoate2phenol	Aromatic	172,770	194,808	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

No primary metabolite regions were found in these records:: VBRR01000001.1; VBRR01000002.1; VBRR01000003.1; VBRR01000004.1; VBRR01000005.1; VBRR01000006.1; VBRR01000007.1; VBRR01000010.1; VBRR01000011.1; VBRR01000013.1; VBRR01000014.1; VBRR01000017.1; VBRR01000020.1; VBRR01000022.1; VBRR01000023.1; VBRR01000024.1; VBRR01000025.1; VBRR01000026.1; VBRR01000028.1; VBRR01000030.1; VBRR01000031.1; VBRR01000032.1; VBRR01000033.1; VBRR01000034.1; VBRR01000036.1; VBRR01000038.1; VBRR01000039.1; VBRR01000040.1; VBRR01000041.1; VBRR01000042.1; VBRR01000043.1; VBRR01000045.1; VBRR01000046.1; VBRR01000047.1; VBRR01000048.1; VBRR01000050.1; VBRR01000051.1; VBRR01000052.1; VBRR01000053.1; VBRR01000054.1; VBRR01000055.1; VBRR01000056.1; VBRR01000058.1; VBRR01000059.1; VBRR01000060.1; VBRR01000061.1; VBRR01000062.1; VBRR01000063.1; VBRR01000064.1; VBRR01000065.1; VBRR01000066.1; VBRR01000067.1; VBRR01000068.1; VBRR01000069.1; VBRR01000070.1; VBRR01000071.1; VBRR01000072.1; VBRR01000073.1; VBRR01000074.1; VBRR01000075.1; VBRR01000076.1; VBRR01000078.1; VBRR01000079.1; VBRR01000080.1; VBRR01000081.1; VBRR01000082.1; VBRR01000084.1; VBRR01000085.1; VBRR01000086.1; VBRR01000087.1; VBRR01000088.1; VBRR01000089.1; VBRR01000090.1; VBRR01000091.1; VBRR01000092.1; VBRR01000093.1; VBRR01000094.1; VBRR01000095.1; VBRR01000096.1; VBRR01000097.1; VBRR01000099.1; VBRR01000100.1; VBRR01000101.1; VBRR01000102.1

Compact view

VBRR01000015.1 - Region 1 - TPP_AA_metabolism

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Location: 155 - 23,446 nt. (total: 23,292 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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No matches found.

VBRR01000018.1 - Region 1 - fatty_acids-unassigned

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Location: 8,064 - 31,300 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

VBRR01000021.1 - Region 1 - fatty_acids-unassigned

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Location: 1 - 48,224 nt. (total: 48,224 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

VBRR01000035.1 - Region 1 - fatty_acids-unassigned

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Location: 48,425 - 73,857 nt. (total: 25,433 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

VBRR01000049.1 - Region 1 - Nitrate_reductase

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Location: 89,615 - 112,071 nt. (total: 22,457 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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VBRR01000057.1 - Region 1 - Putrescine2spermidine

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Location: 2,715 - 23,545 nt. (total: 20,831 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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VBRR01000057.1 - Region 2 - histidine2glutamate_hutHGIU_operon

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Location: 188,996 - 214,407 nt. (total: 25,412 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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VBRR01000083.1 - Region 1 - Fumarate2succinate

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Location: 1 - 15,270 nt. (total: 15,270 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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VBRR01000098.1 - Region 1 - hydroxybenzoate2phenol

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Location: 172,770 - 194,808 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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