GCA_018122465.1 - 8 region(s)

Identified primary metabolite regions

VBRO01000002.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	hydroxybenzoate2phenol	Aromatic	1	15,035	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

VBRO01000003.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	fatty_acids-unassigned	Putative	65,434	88,670	Acetate to butyrate C. sporogenes	BUT	50%

VBRO01000004.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	TPP_AA_metabolism	Putative	153,270	167,260

VBRO01000016.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Fumarate2succinate	SCFA	1	21,972	Acetate to butyrate C. sporogenes	BUT	33%

VBRO01000077.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 70.1	histidine2glutamate_hutHGIU_operon	Other	40,288	62,023	Histidine to glutamate K. pneumoniae	GLU	60%

VBRO01000082.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 75.1	Putrescine2spermidine,Nitrate_reductase	E-MGC	161,966	208,031	Nitrate reductase E. coli	NIR	60%

VBRO01000093.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 85.1	fatty_acids-unassigned	Putative	49,974	102,826

VBRO01000100.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 92.1	fatty_acids-unassigned	Putative	48,450	73,882	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: VBRO01000001.1; VBRO01000005.1; VBRO01000006.1; VBRO01000008.1; VBRO01000009.1; VBRO01000010.1; VBRO01000011.1; VBRO01000012.1; VBRO01000013.1; VBRO01000014.1; VBRO01000015.1; VBRO01000017.1; VBRO01000018.1; VBRO01000019.1; VBRO01000020.1; VBRO01000021.1; VBRO01000022.1; VBRO01000023.1; VBRO01000024.1; VBRO01000025.1; VBRO01000026.1; VBRO01000027.1; VBRO01000028.1; VBRO01000029.1; VBRO01000031.1; VBRO01000032.1; VBRO01000033.1; VBRO01000035.1; VBRO01000036.1; VBRO01000037.1; VBRO01000038.1; VBRO01000039.1; VBRO01000040.1; VBRO01000041.1; VBRO01000042.1; VBRO01000043.1; VBRO01000044.1; VBRO01000045.1; VBRO01000046.1; VBRO01000047.1; VBRO01000048.1; VBRO01000049.1; VBRO01000050.1; VBRO01000051.1; VBRO01000052.1; VBRO01000053.1; VBRO01000055.1; VBRO01000056.1; VBRO01000057.1; VBRO01000058.1; VBRO01000059.1; VBRO01000060.1; VBRO01000061.1; VBRO01000063.1; VBRO01000064.1; VBRO01000065.1; VBRO01000067.1; VBRO01000068.1; VBRO01000069.1; VBRO01000070.1; VBRO01000071.1; VBRO01000072.1; VBRO01000073.1; VBRO01000074.1; VBRO01000076.1; VBRO01000078.1; VBRO01000079.1; VBRO01000080.1; VBRO01000081.1; VBRO01000083.1; VBRO01000084.1; VBRO01000085.1; VBRO01000087.1; VBRO01000088.1; VBRO01000089.1; VBRO01000090.1; VBRO01000091.1; VBRO01000092.1; VBRO01000094.1; VBRO01000095.1; VBRO01000096.1; VBRO01000097.1; VBRO01000098.1; VBRO01000099.1; VBRO01000101.1; VBRO01000102.1

Compact view

VBRO01000002.1 - Region 1 - hydroxybenzoate2phenol

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Location: 1 - 15,035 nt. (total: 15,035 nt) Show pHMM detection rules used

Region on contig edge.

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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core biosynthetic genes

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VBRO01000003.1 - Region 1 - fatty_acids-unassigned

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Location: 65,434 - 88,670 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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VBRO01000004.1 - Region 1 - TPP_AA_metabolism

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Location: 153,270 - 167,260 nt. (total: 13,991 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

VBRO01000016.1 - Region 1 - Fumarate2succinate

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Location: 1 - 21,972 nt. (total: 21,972 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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KnownClusterBlast

Similar known gene clusters

VBRO01000077.1 - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 40,288 - 62,023 nt. (total: 21,736 nt) Show pHMM detection rules used

Region on contig edge.

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

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KnownClusterBlast

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VBRO01000082.1 - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 161,966 - 208,031 nt. (total: 46,066 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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VBRO01000093.1 - Region 1 - fatty_acids-unassigned

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Location: 49,974 - 102,826 nt. (total: 52,853 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

VBRO01000100.1 - Region 1 - fatty_acids-unassigned

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Location: 48,450 - 73,882 nt. (total: 25,433 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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