GCA_018381835.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JAGZRE010000001 (original name was: JAGZRE010000001.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	75,420	87,516

JAGZRE010000006 (original name was: JAGZRE010000006.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	T3PKS	67,364	108,530

JAGZRE010000002 (original name was: JAGZRE010000002.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	RiPP-like	120,088	130,315

JAGZRE010000012 (original name was: JAGZRE010000012.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	lanthipeptide-class-ii	14,890	37,673	salivaricin 9	RiPP:Lanthipeptide	63%

JAGZRE010000015 (original name was: JAGZRE010000015.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	NRPS	1	31,189
Region 35.2	RaS-RiPP	39,201	52,901

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	RiPP-like	75,420	87,516
Region 8.1	T3PKS	67,364	108,530
Region 18.1	RiPP-like	120,088	130,315
Region 29.1	lanthipeptide-class-ii	14,890	37,673	salivaricin 9	RiPP:Lanthipeptide	63%
Region 35.1	NRPS	1	31,189
Region 35.2	RaS-RiPP	39,201	52,901

Compact view

c00001_JAGZRE0.. - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 75,420 - 87,516 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00008_JAGZRE0.. - Region 1 - T3PKS

Download region GenBank file

Download region SVG

Location: 67,364 - 108,530 nt. (total: 41,167 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00018_JAGZRE0.. - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 120,088 - 130,315 nt. (total: 10,228 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00029_JAGZRE0.. - Region 1 - lanthipeptide-class-ii

Download region GenBank file

Download region SVG

Location: 14,890 - 37,673 nt. (total: 22,784 nt) Show pHMM detection rules used

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg29_19 - Putative Class II

allorf_24620_24724 leader / core peptide: MEELDQIIGA - GNGVVLDhbLDhbHECNLADhbWDhbKKLKCC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

allorf_24620_24724 - Class II

Cleavage pHMM score: 5.20

RODEO score: 0

Monoisotopic mass: 2559.3 Da

Molecular weight: 2561.0 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2579.1 Da N = 1

c00035_JAGZRE0.. - Region 1 - NRPS

Download region GenBank file

Download region SVG

Location: 1 - 31,189 nt. (total: 31,189 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 31189:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg35_6

Search NORINE for peptide: strict or relaxed

AMP-binding (16..401): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gmVlMAvVvK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 50% (weak)

AMP-binding (1068..1461): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DmfAIAcnwK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 50% (weak)

ctg35_7

Search NORINE for peptide: strict or relaxed

AMP-binding (89..329): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DI-dLlLtlK
Nearest Stachelhaus code:: hpg
Stachelhaus code match:: 50% (weak)

c00035_JAGZRE0.. - Region 2 - RaS-RiPP

Download region GenBank file

Download region SVG

Location: 39,201 - 52,901 nt. (total: 13,701 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.