GCA_018531105.1 - 2 region(s)

Identified primary metabolite regions

JAHDJN010000005 (original name was: JAHDJN010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Oxidative_glycerol	Other	61,208	85,424

JAHDJN010000024 (original name was: JAHDJN010000024.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	TPP_AA_metabolism	Putative	4,016	24,447

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 3.1	Oxidative_glycerol	Other	61,208	85,424
Region 31.1	TPP_AA_metabolism	Putative	4,016	24,447

No primary metabolite regions were found in these records:: JAHDJN010000004 (original name was: JAHDJN010000004.1); JAHDJN010000037 (original name was: JAHDJN010000037.1); JAHDJN010000038 (original name was: JAHDJN010000038.1); JAHDJN010000039 (original name was: JAHDJN010000039.1); JAHDJN010000006 (original name was: JAHDJN010000006.1); JAHDJN010000007 (original name was: JAHDJN010000007.1); JAHDJN010000008 (original name was: JAHDJN010000008.1); JAHDJN010000040 (original name was: JAHDJN010000040.1); JAHDJN010000009 (original name was: JAHDJN010000009.1); JAHDJN010000010 (original name was: JAHDJN010000010.1); JAHDJN010000011 (original name was: JAHDJN010000011.1); JAHDJN010000041 (original name was: JAHDJN010000041.1); JAHDJN010000012 (original name was: JAHDJN010000012.1); JAHDJN010000042 (original name was: JAHDJN010000042.1); JAHDJN010000013 (original name was: JAHDJN010000013.1); JAHDJN010000014 (original name was: JAHDJN010000014.1); JAHDJN010000015 (original name was: JAHDJN010000015.1); JAHDJN010000043 (original name was: JAHDJN010000043.1); JAHDJN010000016 (original name was: JAHDJN010000016.1); JAHDJN010000017 (original name was: JAHDJN010000017.1); JAHDJN010000018 (original name was: JAHDJN010000018.1); JAHDJN010000019 (original name was: JAHDJN010000019.1); JAHDJN010000020 (original name was: JAHDJN010000020.1); JAHDJN010000044 (original name was: JAHDJN010000044.1); JAHDJN010000021 (original name was: JAHDJN010000021.1); JAHDJN010000045 (original name was: JAHDJN010000045.1); JAHDJN010000022 (original name was: JAHDJN010000022.1); JAHDJN010000046 (original name was: JAHDJN010000046.1); JAHDJN010000023 (original name was: JAHDJN010000023.1); JAHDJN010000047 (original name was: JAHDJN010000047.1); JAHDJN010000025 (original name was: JAHDJN010000025.1); JAHDJN010000048 (original name was: JAHDJN010000048.1); JAHDJN010000049 (original name was: JAHDJN010000049.1); JAHDJN010000026 (original name was: JAHDJN010000026.1); JAHDJN010000027 (original name was: JAHDJN010000027.1); JAHDJN010000028 (original name was: JAHDJN010000028.1); JAHDJN010000050 (original name was: JAHDJN010000050.1); JAHDJN010000051 (original name was: JAHDJN010000051.1); JAHDJN010000052 (original name was: JAHDJN010000052.1); JAHDJN010000029 (original name was: JAHDJN010000029.1); JAHDJN010000030 (original name was: JAHDJN010000030.1); JAHDJN010000031 (original name was: JAHDJN010000031.1); JAHDJN010000032 (original name was: JAHDJN010000032.1); JAHDJN010000053 (original name was: JAHDJN010000053.1); JAHDJN010000054 (original name was: JAHDJN010000054.1); JAHDJN010000055 (original name was: JAHDJN010000055.1); JAHDJN010000056 (original name was: JAHDJN010000056.1); JAHDJN010000033 (original name was: JAHDJN010000033.1); JAHDJN010000057 (original name was: JAHDJN010000057.1); JAHDJN010000001 (original name was: JAHDJN010000001.1); JAHDJN010000034 (original name was: JAHDJN010000034.1); JAHDJN010000035 (original name was: JAHDJN010000035.1); JAHDJN010000002 (original name was: JAHDJN010000002.1); JAHDJN010000036 (original name was: JAHDJN010000036.1); JAHDJN010000003 (original name was: JAHDJN010000003.1)

Compact view

c00003_JAHDJN0.. - Region 1 - Oxidative_glycerol

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Location: 61,208 - 85,424 nt. (total: 24,217 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00031_JAHDJN0.. - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 4,016 - 24,447 nt. (total: 20,432 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.