GCA_018603675.1 - 8 region(s)

Identified primary metabolite regions

JAHFZS010000011 (original name was: JAHFZS010000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Oxidative_glycerol	Other	23,444	56,511

JAHFZS010000019 (original name was: JAHFZS010000019.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	Pyruvate2acetate-formate	SCFA	1	19,363	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAHFZS010000021 (original name was: JAHFZS010000021.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	TPP_AA_metabolism	Putative	3,302	34,539

JAHFZS010000003 (original name was: JAHFZS010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 58.1	TPP_AA_metabolism,fatty_acids-unassigned	Putative	1	53,045	Acetate to butyrate C. sporogenes	BUT	33%

JAHFZS010000050 (original name was: JAHFZS010000050.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 71.1	fatty_acids-unassigned	Putative	4,752	24,401	Acetate to butyrate C. sporogenes	BUT	33%

JAHFZS010000051 (original name was: JAHFZS010000051.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 72.1	Putrescine2spermidine	Aliphatic_amine	1	17,706	Arginine2putrescine R. gnavus	PUTR	40%

JAHFZS010000054 (original name was: JAHFZS010000054.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 75.1	Fumarate2succinate	SCFA	1	18,180

JAHFZS010000008 (original name was: JAHFZS010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 112.1	fatty_acids-unassigned	Putative	24,757	50,547	Acetate to butyrate C. sporogenes	BUT	33%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 22.1	Oxidative_glycerol	Other	23,444	56,511
Region 37.1	Pyruvate2acetate-formate	SCFA	1	19,363	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 39.1	TPP_AA_metabolism	Putative	3,302	34,539
Region 58.1	TPP_AA_metabolism,fatty_acids-unassigned	Putative	1	53,045	Acetate to butyrate C. sporogenes	BUT	33%
Region 71.1	fatty_acids-unassigned	Putative	4,752	24,401	Acetate to butyrate C. sporogenes	BUT	33%
Region 72.1	Putrescine2spermidine	Aliphatic_amine	1	17,706	Arginine2putrescine R. gnavus	PUTR	40%
Region 75.1	Fumarate2succinate	SCFA	1	18,180
Region 112.1	fatty_acids-unassigned	Putative	24,757	50,547	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: JAHFZS010000098 (original name was: JAHFZS010000098.1); JAHFZS010000099 (original name was: JAHFZS010000099.1); JAHFZS010000100 (original name was: JAHFZS010000100.1); JAHFZS010000101 (original name was: JAHFZS010000101.1); JAHFZS010000102 (original name was: JAHFZS010000102.1); JAHFZS010000103 (original name was: JAHFZS010000103.1); JAHFZS010000104 (original name was: JAHFZS010000104.1); JAHFZS010000105 (original name was: JAHFZS010000105.1); JAHFZS010000106 (original name was: JAHFZS010000106.1); JAHFZS010000107 (original name was: JAHFZS010000107.1); JAHFZS010000010 (original name was: JAHFZS010000010.1); JAHFZS010000108 (original name was: JAHFZS010000108.1); JAHFZS010000109 (original name was: JAHFZS010000109.1); JAHFZS010000110 (original name was: JAHFZS010000110.1); JAHFZS010000111 (original name was: JAHFZS010000111.1); JAHFZS010000112 (original name was: JAHFZS010000112.1); JAHFZS010000113 (original name was: JAHFZS010000113.1); JAHFZS010000114 (original name was: JAHFZS010000114.1); JAHFZS010000115 (original name was: JAHFZS010000115.1); JAHFZS010000116 (original name was: JAHFZS010000116.1); JAHFZS010000117 (original name was: JAHFZS010000117.1); JAHFZS010000118 (original name was: JAHFZS010000118.1); JAHFZS010000119 (original name was: JAHFZS010000119.1); JAHFZS010000120 (original name was: JAHFZS010000120.1); JAHFZS010000121 (original name was: JAHFZS010000121.1); JAHFZS010000122 (original name was: JAHFZS010000122.1); JAHFZS010000012 (original name was: JAHFZS010000012.1); JAHFZS010000123 (original name was: JAHFZS010000123.1); JAHFZS010000013 (original name was: JAHFZS010000013.1); JAHFZS010000014 (original name was: JAHFZS010000014.1); JAHFZS010000015 (original name was: JAHFZS010000015.1); JAHFZS010000016 (original name was: JAHFZS010000016.1); JAHFZS010000017 (original name was: JAHFZS010000017.1); JAHFZS010000018 (original name was: JAHFZS010000018.1); JAHFZS010000001 (original name was: JAHFZS010000001.1); JAHFZS010000020 (original name was: JAHFZS010000020.1); JAHFZS010000022 (original name was: JAHFZS010000022.1); JAHFZS010000023 (original name was: JAHFZS010000023.1); JAHFZS010000024 (original name was: JAHFZS010000024.1); JAHFZS010000025 (original name was: JAHFZS010000025.1); JAHFZS010000026 (original name was: JAHFZS010000026.1); JAHFZS010000027 (original name was: JAHFZS010000027.1); JAHFZS010000028 (original name was: JAHFZS010000028.1); JAHFZS010000002 (original name was: JAHFZS010000002.1); JAHFZS010000029 (original name was: JAHFZS010000029.1); JAHFZS010000030 (original name was: JAHFZS010000030.1); JAHFZS010000031 (original name was: JAHFZS010000031.1); JAHFZS010000032 (original name was: JAHFZS010000032.1); JAHFZS010000033 (original name was: JAHFZS010000033.1); JAHFZS010000034 (original name was: JAHFZS010000034.1); JAHFZS010000035 (original name was: JAHFZS010000035.1); JAHFZS010000036 (original name was: JAHFZS010000036.1); JAHFZS010000037 (original name was: JAHFZS010000037.1); JAHFZS010000038 (original name was: JAHFZS010000038.1); JAHFZS010000039 (original name was: JAHFZS010000039.1); JAHFZS010000040 (original name was: JAHFZS010000040.1); JAHFZS010000041 (original name was: JAHFZS010000041.1); JAHFZS010000042 (original name was: JAHFZS010000042.1); JAHFZS010000043 (original name was: JAHFZS010000043.1); JAHFZS010000044 (original name was: JAHFZS010000044.1); JAHFZS010000045 (original name was: JAHFZS010000045.1); JAHFZS010000046 (original name was: JAHFZS010000046.1); JAHFZS010000047 (original name was: JAHFZS010000047.1); JAHFZS010000048 (original name was: JAHFZS010000048.1); JAHFZS010000004 (original name was: JAHFZS010000004.1); JAHFZS010000049 (original name was: JAHFZS010000049.1); JAHFZS010000052 (original name was: JAHFZS010000052.1); JAHFZS010000053 (original name was: JAHFZS010000053.1); JAHFZS010000055 (original name was: JAHFZS010000055.1); JAHFZS010000056 (original name was: JAHFZS010000056.1); JAHFZS010000057 (original name was: JAHFZS010000057.1); JAHFZS010000058 (original name was: JAHFZS010000058.1); JAHFZS010000005 (original name was: JAHFZS010000005.1); JAHFZS010000059 (original name was: JAHFZS010000059.1); JAHFZS010000060 (original name was: JAHFZS010000060.1); JAHFZS010000061 (original name was: JAHFZS010000061.1); JAHFZS010000062 (original name was: JAHFZS010000062.1); JAHFZS010000063 (original name was: JAHFZS010000063.1); JAHFZS010000064 (original name was: JAHFZS010000064.1); JAHFZS010000065 (original name was: JAHFZS010000065.1); JAHFZS010000066 (original name was: JAHFZS010000066.1); JAHFZS010000067 (original name was: JAHFZS010000067.1); JAHFZS010000068 (original name was: JAHFZS010000068.1); JAHFZS010000006 (original name was: JAHFZS010000006.1); JAHFZS010000069 (original name was: JAHFZS010000069.1); JAHFZS010000070 (original name was: JAHFZS010000070.1); JAHFZS010000071 (original name was: JAHFZS010000071.1); JAHFZS010000072 (original name was: JAHFZS010000072.1); JAHFZS010000073 (original name was: JAHFZS010000073.1); JAHFZS010000074 (original name was: JAHFZS010000074.1); JAHFZS010000075 (original name was: JAHFZS010000075.1); JAHFZS010000076 (original name was: JAHFZS010000076.1); JAHFZS010000077 (original name was: JAHFZS010000077.1); JAHFZS010000007 (original name was: JAHFZS010000007.1); JAHFZS010000078 (original name was: JAHFZS010000078.1); JAHFZS010000079 (original name was: JAHFZS010000079.1); JAHFZS010000080 (original name was: JAHFZS010000080.1); JAHFZS010000081 (original name was: JAHFZS010000081.1); JAHFZS010000082 (original name was: JAHFZS010000082.1); JAHFZS010000083 (original name was: JAHFZS010000083.1); JAHFZS010000084 (original name was: JAHFZS010000084.1); JAHFZS010000085 (original name was: JAHFZS010000085.1); JAHFZS010000086 (original name was: JAHFZS010000086.1); JAHFZS010000087 (original name was: JAHFZS010000087.1); JAHFZS010000088 (original name was: JAHFZS010000088.1); JAHFZS010000089 (original name was: JAHFZS010000089.1); JAHFZS010000090 (original name was: JAHFZS010000090.1); JAHFZS010000091 (original name was: JAHFZS010000091.1); JAHFZS010000092 (original name was: JAHFZS010000092.1); JAHFZS010000093 (original name was: JAHFZS010000093.1); JAHFZS010000094 (original name was: JAHFZS010000094.1); JAHFZS010000095 (original name was: JAHFZS010000095.1); JAHFZS010000096 (original name was: JAHFZS010000096.1); JAHFZS010000097 (original name was: JAHFZS010000097.1); JAHFZS010000009 (original name was: JAHFZS010000009.1)

Compact view

c00022_JAHFZS0.. - Region 1 - Oxidative_glycerol

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Location: 23,444 - 56,511 nt. (total: 33,068 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00037_JAHFZS0.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 19,363 nt. (total: 19,363 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00039_JAHFZS0.. - Region 1 - TPP_AA_metabolism

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Location: 3,302 - 34,539 nt. (total: 31,238 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00058_JAHFZS0.. - Region 1 - TPP_AA_metabolism,fatty_acids-unassigned

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Location: 1 - 53,045 nt. (total: 53,045 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00071_JAHFZS0.. - Region 1 - fatty_acids-unassigned

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Location: 4,752 - 24,401 nt. (total: 19,650 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00072_JAHFZS0.. - Region 1 - Putrescine2spermidine

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Location: 1 - 17,706 nt. (total: 17,706 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00075_JAHFZS0.. - Region 1 - Fumarate2succinate

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Location: 1 - 18,180 nt. (total: 18,180 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

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c00112_JAHFZS0.. - Region 1 - fatty_acids-unassigned

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Location: 24,757 - 50,547 nt. (total: 25,791 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters