GCA_018603725.1 - 7 region(s)

Identified primary metabolite regions

JAHFZW010000001 (original name was: JAHFZW010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	fatty_acids-unassigned	Putative	48,286	73,640	Acetate to butyrate C. sporogenes	BUT	33%

JAHFZW010000020 (original name was: JAHFZW010000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Putrescine2spermidine,Nitrate_reductase	E-MGC	1	43,014	Nitrate reductase E. coli	NIR	60%

JAHFZW010000023 (original name was: JAHFZW010000023.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	histidine2glutamate_hutHGIU_operon	Other	39,677	60,313	Histidine to glutamate K. pneumoniae	GLU	60%

JAHFZW010000002 (original name was: JAHFZW010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_AA_metabolism,TPP_fatty_acids,Fumarate2succinate	SCFA	110,211	144,625	Acetate to butyrate C. sporogenes	BUT	33%

JAHFZW010000003 (original name was: JAHFZW010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	fatty_acids-unassigned	Putative	85,515	108,751	Acetate to butyrate C. sporogenes	BUT	50%

JAHFZW010000004 (original name was: JAHFZW010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	hydroxybenzoate2phenol	Aromatic	195,239	210,492	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

JAHFZW010000006 (original name was: JAHFZW010000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	fatty_acids-unassigned	Putative	50,933	103,787

No primary metabolite regions were found in these records:: JAHFZW010000010 (original name was: JAHFZW010000010.1); JAHFZW010000011 (original name was: JAHFZW010000011.1); JAHFZW010000012 (original name was: JAHFZW010000012.1); JAHFZW010000013 (original name was: JAHFZW010000013.1); JAHFZW010000014 (original name was: JAHFZW010000014.1); JAHFZW010000015 (original name was: JAHFZW010000015.1); JAHFZW010000016 (original name was: JAHFZW010000016.1); JAHFZW010000017 (original name was: JAHFZW010000017.1); JAHFZW010000018 (original name was: JAHFZW010000018.1); JAHFZW010000019 (original name was: JAHFZW010000019.1); JAHFZW010000021 (original name was: JAHFZW010000021.1); JAHFZW010000022 (original name was: JAHFZW010000022.1); JAHFZW010000024 (original name was: JAHFZW010000024.1); JAHFZW010000025 (original name was: JAHFZW010000025.1); JAHFZW010000026 (original name was: JAHFZW010000026.1); JAHFZW010000027 (original name was: JAHFZW010000027.1); JAHFZW010000028 (original name was: JAHFZW010000028.1); JAHFZW010000029 (original name was: JAHFZW010000029.1); JAHFZW010000030 (original name was: JAHFZW010000030.1); JAHFZW010000031 (original name was: JAHFZW010000031.1); JAHFZW010000032 (original name was: JAHFZW010000032.1); JAHFZW010000033 (original name was: JAHFZW010000033.1); JAHFZW010000034 (original name was: JAHFZW010000034.1); JAHFZW010000035 (original name was: JAHFZW010000035.1); JAHFZW010000036 (original name was: JAHFZW010000036.1); JAHFZW010000037 (original name was: JAHFZW010000037.1); JAHFZW010000038 (original name was: JAHFZW010000038.1); JAHFZW010000039 (original name was: JAHFZW010000039.1); JAHFZW010000040 (original name was: JAHFZW010000040.1); JAHFZW010000041 (original name was: JAHFZW010000041.1); JAHFZW010000042 (original name was: JAHFZW010000042.1); JAHFZW010000043 (original name was: JAHFZW010000043.1); JAHFZW010000044 (original name was: JAHFZW010000044.1); JAHFZW010000045 (original name was: JAHFZW010000045.1); JAHFZW010000046 (original name was: JAHFZW010000046.1); JAHFZW010000047 (original name was: JAHFZW010000047.1); JAHFZW010000048 (original name was: JAHFZW010000048.1); JAHFZW010000049 (original name was: JAHFZW010000049.1); JAHFZW010000050 (original name was: JAHFZW010000050.1); JAHFZW010000051 (original name was: JAHFZW010000051.1); JAHFZW010000052 (original name was: JAHFZW010000052.1); JAHFZW010000053 (original name was: JAHFZW010000053.1); JAHFZW010000054 (original name was: JAHFZW010000054.1); JAHFZW010000055 (original name was: JAHFZW010000055.1); JAHFZW010000056 (original name was: JAHFZW010000056.1); JAHFZW010000057 (original name was: JAHFZW010000057.1); JAHFZW010000005 (original name was: JAHFZW010000005.1); JAHFZW010000007 (original name was: JAHFZW010000007.1); JAHFZW010000008 (original name was: JAHFZW010000008.1); JAHFZW010000009 (original name was: JAHFZW010000009.1)

Compact view

c00011_JAHFZW0.. - Region 1 - fatty_acids-unassigned

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Location: 48,286 - 73,640 nt. (total: 25,355 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00012_JAHFZW0.. - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 1 - 43,014 nt. (total: 43,014 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00015_JAHFZW0.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 39,677 - 60,313 nt. (total: 20,637 nt) Show pHMM detection rules used

Region on contig edge.

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00022_JAHFZW0.. - Region 1 - Fumarate2succinate,TPP_AA_metabolism,TPP_fatty_acids

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Location: 110,211 - 144,625 nt. (total: 34,415 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00033_JAHFZW0.. - Region 1 - fatty_acids-unassigned

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Location: 85,515 - 108,751 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00044_JAHFZW0.. - Region 1 - hydroxybenzoate2phenol

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Location: 195,239 - 210,492 nt. (total: 15,254 nt) Show pHMM detection rules used

Region on contig edge.

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00054_JAHFZW0.. - Region 1 - fatty_acids-unassigned

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Location: 50,933 - 103,787 nt. (total: 52,855 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

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