GCA_018729425.1 - 3 region(s)

Identified primary metabolite regions

JAHHQA010000001 (original name was: JAHHQA010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	TPP_fatty_acids	Putative	237,480	263,181

JAHHQA010000010 (original name was: JAHHQA010000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	TPP_AA_metabolism	Putative	1	30,147

JAHHQA010000003 (original name was: JAHHQA010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	Pyruvate2acetate-formate	SCFA	162,215	184,957	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	TPP_fatty_acids	Putative	237,480	263,181
Region 2.1	TPP_AA_metabolism	Putative	1	30,147
Region 34.1	Pyruvate2acetate-formate	SCFA	162,215	184,957	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: JAHHQA010000096 (original name was: JAHHQA010000096.1); JAHHQA010000097 (original name was: JAHHQA010000097.1); JAHHQA010000098 (original name was: JAHHQA010000098.1); JAHHQA010000099 (original name was: JAHHQA010000099.1); JAHHQA010000100 (original name was: JAHHQA010000100.1); JAHHQA010000101 (original name was: JAHHQA010000101.1); JAHHQA010000102 (original name was: JAHHQA010000102.1); JAHHQA010000103 (original name was: JAHHQA010000103.1); JAHHQA010000104 (original name was: JAHHQA010000104.1); JAHHQA010000105 (original name was: JAHHQA010000105.1); JAHHQA010000011 (original name was: JAHHQA010000011.1); JAHHQA010000106 (original name was: JAHHQA010000106.1); JAHHQA010000012 (original name was: JAHHQA010000012.1); JAHHQA010000013 (original name was: JAHHQA010000013.1); JAHHQA010000014 (original name was: JAHHQA010000014.1); JAHHQA010000015 (original name was: JAHHQA010000015.1); JAHHQA010000016 (original name was: JAHHQA010000016.1); JAHHQA010000017 (original name was: JAHHQA010000017.1); JAHHQA010000018 (original name was: JAHHQA010000018.1); JAHHQA010000019 (original name was: JAHHQA010000019.1); JAHHQA010000002 (original name was: JAHHQA010000002.1); JAHHQA010000020 (original name was: JAHHQA010000020.1); JAHHQA010000021 (original name was: JAHHQA010000021.1); JAHHQA010000022 (original name was: JAHHQA010000022.1); JAHHQA010000023 (original name was: JAHHQA010000023.1); JAHHQA010000024 (original name was: JAHHQA010000024.1); JAHHQA010000025 (original name was: JAHHQA010000025.1); JAHHQA010000026 (original name was: JAHHQA010000026.1); JAHHQA010000027 (original name was: JAHHQA010000027.1); JAHHQA010000028 (original name was: JAHHQA010000028.1); JAHHQA010000029 (original name was: JAHHQA010000029.1); JAHHQA010000030 (original name was: JAHHQA010000030.1); JAHHQA010000031 (original name was: JAHHQA010000031.1); JAHHQA010000032 (original name was: JAHHQA010000032.1); JAHHQA010000033 (original name was: JAHHQA010000033.1); JAHHQA010000034 (original name was: JAHHQA010000034.1); JAHHQA010000035 (original name was: JAHHQA010000035.1); JAHHQA010000036 (original name was: JAHHQA010000036.1); JAHHQA010000037 (original name was: JAHHQA010000037.1); JAHHQA010000038 (original name was: JAHHQA010000038.1); JAHHQA010000039 (original name was: JAHHQA010000039.1); JAHHQA010000004 (original name was: JAHHQA010000004.1); JAHHQA010000040 (original name was: JAHHQA010000040.1); JAHHQA010000041 (original name was: JAHHQA010000041.1); JAHHQA010000042 (original name was: JAHHQA010000042.1); JAHHQA010000043 (original name was: JAHHQA010000043.1); JAHHQA010000044 (original name was: JAHHQA010000044.1); JAHHQA010000045 (original name was: JAHHQA010000045.1); JAHHQA010000046 (original name was: JAHHQA010000046.1); JAHHQA010000047 (original name was: JAHHQA010000047.1); JAHHQA010000048 (original name was: JAHHQA010000048.1); JAHHQA010000049 (original name was: JAHHQA010000049.1); JAHHQA010000005 (original name was: JAHHQA010000005.1); JAHHQA010000050 (original name was: JAHHQA010000050.1); JAHHQA010000051 (original name was: JAHHQA010000051.1); JAHHQA010000052 (original name was: JAHHQA010000052.1); JAHHQA010000053 (original name was: JAHHQA010000053.1); JAHHQA010000054 (original name was: JAHHQA010000054.1); JAHHQA010000055 (original name was: JAHHQA010000055.1); JAHHQA010000056 (original name was: JAHHQA010000056.1); JAHHQA010000057 (original name was: JAHHQA010000057.1); JAHHQA010000058 (original name was: JAHHQA010000058.1); JAHHQA010000059 (original name was: JAHHQA010000059.1); JAHHQA010000006 (original name was: JAHHQA010000006.1); JAHHQA010000060 (original name was: JAHHQA010000060.1); JAHHQA010000061 (original name was: JAHHQA010000061.1); JAHHQA010000062 (original name was: JAHHQA010000062.1); JAHHQA010000063 (original name was: JAHHQA010000063.1); JAHHQA010000064 (original name was: JAHHQA010000064.1); JAHHQA010000065 (original name was: JAHHQA010000065.1); JAHHQA010000066 (original name was: JAHHQA010000066.1); JAHHQA010000067 (original name was: JAHHQA010000067.1); JAHHQA010000007 (original name was: JAHHQA010000007.1); JAHHQA010000068 (original name was: JAHHQA010000068.1); JAHHQA010000069 (original name was: JAHHQA010000069.1); JAHHQA010000070 (original name was: JAHHQA010000070.1); JAHHQA010000071 (original name was: JAHHQA010000071.1); JAHHQA010000072 (original name was: JAHHQA010000072.1); JAHHQA010000073 (original name was: JAHHQA010000073.1); JAHHQA010000074 (original name was: JAHHQA010000074.1); JAHHQA010000075 (original name was: JAHHQA010000075.1); JAHHQA010000076 (original name was: JAHHQA010000076.1); JAHHQA010000008 (original name was: JAHHQA010000008.1); JAHHQA010000077 (original name was: JAHHQA010000077.1); JAHHQA010000078 (original name was: JAHHQA010000078.1); JAHHQA010000079 (original name was: JAHHQA010000079.1); JAHHQA010000080 (original name was: JAHHQA010000080.1); JAHHQA010000081 (original name was: JAHHQA010000081.1); JAHHQA010000082 (original name was: JAHHQA010000082.1); JAHHQA010000083 (original name was: JAHHQA010000083.1); JAHHQA010000084 (original name was: JAHHQA010000084.1); JAHHQA010000085 (original name was: JAHHQA010000085.1); JAHHQA010000009 (original name was: JAHHQA010000009.1); JAHHQA010000086 (original name was: JAHHQA010000086.1); JAHHQA010000087 (original name was: JAHHQA010000087.1); JAHHQA010000088 (original name was: JAHHQA010000088.1); JAHHQA010000089 (original name was: JAHHQA010000089.1); JAHHQA010000090 (original name was: JAHHQA010000090.1); JAHHQA010000091 (original name was: JAHHQA010000091.1); JAHHQA010000092 (original name was: JAHHQA010000092.1); JAHHQA010000093 (original name was: JAHHQA010000093.1); JAHHQA010000094 (original name was: JAHHQA010000094.1); JAHHQA010000095 (original name was: JAHHQA010000095.1)

Compact view

c00001_JAHHQA0.. - Region 1 - TPP_fatty_acids

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Location: 237,480 - 263,181 nt. (total: 25,702 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00002_JAHHQA0.. - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 1 - 30,147 nt. (total: 30,147 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00034_JAHHQA0.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 162,215 - 184,957 nt. (total: 22,743 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters